View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_1 (Length: 784)
Name: NF14889_low_1
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 14 - 771
Target Start/End: Original strand, 48961179 - 48961959
Alignment:
| Q |
14 |
gcatagggagaatcaaaatcacagcaatggtgaattccataggcagactcaaaatcacagcaattcttcccatcatggaaaacacattactgtgaaagga |
113 |
Q |
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| T |
48961179 |
gcatagggagaatcaaaatcacagcaatggtgaattccataggcagactcaaaatcacagcaattcttcccatcatggaaaacacattactgtgaaagga |
48961278 |
T |
|
| Q |
114 |
agagaatccagcaaggagaaaaagttttcagattctgaggactctggcatgagagtgataacaattgcaggggaaaacagaggagcctatatggaactag |
213 |
Q |
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| T |
48961279 |
agagaatccagcaaggagaaaaagttttcagattctgaggactctggcatgagagtgataacaattgcaggggaaaacagaggagcctatatggaactag |
48961378 |
T |
|
| Q |
214 |
ttcaatcccaaaagaaacaccaacccaattatcttcacaagaaggggaacacaatcaaagttgatggtggtgaatctgagagttcaagtgctgatgaagg |
313 |
Q |
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| T |
48961379 |
ttcaatcccaaaagaaacaccaacccaattatcttcacaagaaggggaacacaatcaaagttgacggtggtgaatctgagagttcaagtgctgatgaagg |
48961478 |
T |
|
| Q |
314 |
aaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgtgtcaataactct |
413 |
Q |
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| T |
48961479 |
aaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgtgtcaataactct |
48961578 |
T |
|
| Q |
414 |
ctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtgaaggaacatgttg |
513 |
Q |
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| T |
48961579 |
ctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtgaaggaaaatgttg |
48961678 |
T |
|
| Q |
514 |
atggtcgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggggaataaaggttg |
613 |
Q |
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| T |
48961679 |
atggttgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggggaataaaggttg |
48961778 |
T |
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| Q |
614 |
aagattctctccacttcatcattagtggaaaataaat--------gcatgcat--atggatgcat--------------gactttaactccaaccagatg |
689 |
Q |
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| T |
48961779 |
aagattctctccact---tcattagtggaaaataaatgtatggacgcatgcatgcatgcatgcatgcatatggatgcatgactttaactccaaccaggtg |
48961875 |
T |
|
| Q |
690 |
ctacctta--gttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtgatatatg |
771 |
Q |
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| T |
48961876 |
ctaccttagtgttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtgatatatg |
48961959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 493
Target Start/End: Original strand, 9485931 - 9486046
Alignment:
| Q |
378 |
tacatgaacagcaatgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagc |
477 |
Q |
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|||||||| |||||||| |||||||| ||||| || | | | ||||||||||| |||| ||||||||||| |||| ||| | || |||||||||| |
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| T |
9485931 |
tacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagc |
9486030 |
T |
|
| Q |
478 |
catttggtgaaggcta |
493 |
Q |
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| T |
9486031 |
catttggtaaaggcta |
9486046 |
T |
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