View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_10 (Length: 243)
Name: NF14889_low_10
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 7237957 - 7237743
Alignment:
| Q |
19 |
gtttcaacaatatttctacaggttatagtctccatacaaagtctagtcttgactgcaaaaccttacttaatggttttgccacccaaaagaccaagcggtg |
118 |
Q |
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| T |
7237957 |
gtttcaacaatatttctacaggttatagtctccatacaaggtctagtcttgactgcaaaaccttacttaatggttttgccacccaaaagaccaagcggcg |
7237858 |
T |
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| Q |
119 |
aagcttgttgtcaacttgtattctatttatgtgtaattaatccttgatttatataatgattttaagtgaatacttttctttttggtcaatttaagtgttg |
218 |
Q |
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| T |
7237857 |
aagcttgttgtcaacttgtattctatttatgtgtaattaatccttgatttatataatgattttaagtgaatacttttctttttggtcaatttaagtgttg |
7237758 |
T |
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| Q |
219 |
cccacttgatctgtg |
233 |
Q |
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| T |
7237757 |
cccacttgatctgtg |
7237743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 41432175 - 41432227
Alignment:
| Q |
34 |
ctacaggttatagtctccatacaaagtctagtcttgactgcaaaaccttactt |
86 |
Q |
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| T |
41432175 |
ctacaagttctagtctccatacaaggtctaatcttgaatgcaaagccttactt |
41432227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 33370465 - 33370517
Alignment:
| Q |
34 |
ctacaggttatagtctccatacaaagtctagtcttgactgcaaaaccttactt |
86 |
Q |
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| T |
33370465 |
ctacaggttctagtctccatacaaattctaatcttgaatgcaaagccttactt |
33370517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 5838999 - 5838958
Alignment:
| Q |
32 |
ttctacaggttatagtctccatacaaagtctagtcttgactg |
73 |
Q |
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| T |
5838999 |
ttctacaggttctagtctccattcaaggtctagtcttgactg |
5838958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 18671007 - 18670979
Alignment:
| Q |
138 |
attctatttatgtgtaattaatccttgat |
166 |
Q |
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| T |
18671007 |
attctatttatgtgtaattaatccttgat |
18670979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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