View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14889_low_11 (Length: 236)
Name: NF14889_low_11
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 27514604 - 27514395
Alignment:
| Q |
9 |
catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtg |
107 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27514604 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgt- |
27514506 |
T |
|
| Q |
108 |
caacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctg |
207 |
Q |
| |
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|| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
27514505 |
cagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagcta |
27514406 |
T |
|
| Q |
208 |
gtaagtgacta |
218 |
Q |
| |
|
||||||||||| |
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|
| T |
27514405 |
gtaagtgacta |
27514395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 27524245 - 27524023
Alignment:
| Q |
7 |
atcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat-- |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
27524245 |
atcatagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgt |
27524146 |
T |
|
| Q |
105 |
------gtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgat |
198 |
Q |
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||||||| |||||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27524145 |
gctcaagtgcaacgtcatatttcttcatgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgat |
27524046 |
T |
|
| Q |
199 |
gtccagctggtaagtgactacat |
221 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
27524045 |
gtccagctggtaagtgtctacat |
27524023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 27468757 - 27468975
Alignment:
| Q |
9 |
catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtg |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27468757 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtg |
27468856 |
T |
|
| Q |
108 |
c--------aacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatg |
199 |
Q |
| |
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| | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27468857 |
ctcaagtgcagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatg |
27468956 |
T |
|
| Q |
200 |
tccagctggtaagtgacta |
218 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
27468957 |
tgaagctggtaagtgacta |
27468975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 27503644 - 27503427
Alignment:
| Q |
7 |
atcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatg |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
27503644 |
atcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatg |
27503545 |
T |
|
| Q |
106 |
tg--caa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctga |
197 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
27503544 |
tgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttga |
27503448 |
T |
|
| Q |
198 |
tgtccagctggtaagtgacta |
218 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
27503447 |
tgtccagctgataagtgacta |
27503427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 27475993 - 27476204
Alignment:
| Q |
12 |
agggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--c |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||| | |
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|
| T |
27475993 |
agggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatc |
27476092 |
T |
|
| Q |
109 |
aa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcc |
202 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | | | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
27476093 |
aagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgtga |
27476189 |
T |
|
| Q |
203 |
agctggtaagtgact |
217 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
27476190 |
agctggtatgtgact |
27476204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 27508585 - 27508488
Alignment:
| Q |
9 |
catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
106 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27508585 |
catagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 27508486 - 27508410
Alignment:
| Q |
142 |
cttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtgacta |
218 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgacta |
27508410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27556962 - 27557033
Alignment:
| Q |
144 |
tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtga |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||| |
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|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtga |
27557033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 27489723 - 27489616
Alignment:
| Q |
106 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagc |
205 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |
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|
| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagc |
27489626 |
T |
|
| Q |
206 |
tggtaagtga |
215 |
Q |
| |
|
|||| ||||| |
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|
| T |
27489625 |
tggttagtga |
27489616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 27506325 - 27506260
Alignment:
| Q |
141 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagct |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||| |
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|
| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtccagct |
27506260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 27479399 - 27479464
Alignment:
| Q |
141 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagct |
206 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27479399 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct |
27479464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 27497858 - 27497922
Alignment:
| Q |
151 |
tttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtga |
215 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtga |
27497922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 27486459 - 27486521
Alignment:
| Q |
141 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
203 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| | | || ||||||||| |
|
|
| T |
27486459 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca |
27486521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 27526747 - 27526689
Alignment:
| Q |
139 |
gtacttcataattttgtaaacatgcttcagacatg-ttttcttcattatgataatgctg |
196 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27526747 |
gtacttcataattttgaaaacattgttcagacatgtttttcttcattatgataatgctg |
27526689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 27554101 - 27554174
Alignment:
| Q |
139 |
gtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagt |
213 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||| ||||||| |||||||| |||| |||||||||||||| |
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|
| T |
27554101 |
gtacttcataattttgcaaacatgtctaagacatgttt-cttcattttgataatgttgatctccagctggtaagt |
27554174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 27431937 - 27431871
Alignment:
| Q |
143 |
ttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggta |
210 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| |||||| |||||||| |||||||||||||||| |
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|
| T |
27431937 |
ttcataattttgtaaacatgcattatacatgttt-cttcatcttgataatgttgatgtccagctggta |
27431871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 27517451 - 27517369
Alignment:
| Q |
22 |
tagcatgtggtgttgtcttc-gagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
103 |
Q |
| |
|
|||||||||| |||||||| || ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
27517451 |
tagcatgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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