View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_12 (Length: 231)
Name: NF14889_low_12
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5697911 - 5698123
Alignment:
| Q |
1 |
gttgggaaataaatcattcccatattatatagttacttttaacatgtttggttatttcattcccacaatcattacattagcaccaccgtacaggggatac |
100 |
Q |
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| T |
5697911 |
gttgggaaataaatcattcccatattatatagttacttttaacatgtttggttatttcattcccacaatcattacactagcaccaccgtacaggggatac |
5698010 |
T |
|
| Q |
101 |
tctacacttaggagtaacggcaatgctatattgattagattaggcatatttggtatgaaaatcttcatccaaaatatatcccagaatttggattcataag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698011 |
tctatacttaggagtaacggcaatgctatattgattagattaggcatatttggtatgaaaatcttcatccaaaatatatcccagaatttggattcataag |
5698110 |
T |
|
| Q |
201 |
tgttaggaggtga |
213 |
Q |
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| T |
5698111 |
tgttaggaggtga |
5698123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5686152 - 5686324
Alignment:
| Q |
1 |
gttgggaaataaatcattcccatattatatagttacttttaacatgtttggttatttcattcccacaatcattacattagcaccaccgtacaggggatac |
100 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||| ||||||| || |
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| T |
5686152 |
gttgggaaataaatcatacccatat---atagttacttttaacatgtttggtcctttcattcccacaattattgcactaggacc---gtacaggatccac |
5686245 |
T |
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| Q |
101 |
tctacacttaggagtaacggcaatgctatattgattagattaggcatatttgg-tatgaaaatcttcatccaaaatata |
178 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
5686246 |
tctacacttgggagtaacggcaatgctatattgattagattaggcatatttggatatgaaaatctccatccaaaatata |
5686324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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