View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_2 (Length: 641)
Name: NF14889_low_2
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 15 - 626
Target Start/End: Complemental strand, 222649 - 222038
Alignment:
| Q |
15 |
gagaagaatcgaaaactacacaatcagtttaacaccgaagaagcttccacttcttgtgtgaaccctatattcgccggagtttcaatttttgtcgatggtt |
114 |
Q |
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| T |
222649 |
gagaagaatcgaaaactacacaatcagtttaacaccgaagaagcttccacttcttgtgggaaccctatattcgccggagtttcaatttttgtcgatggtt |
222550 |
T |
|
| Q |
115 |
tcaccgttccttccagtcaggaactgcgtggatacatgttaaagtatggtggaagatttgagaattatttctcaaggcatcgtgtaacacatatcatctg |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222549 |
tcaccgttccatccagtcaggaactgcgtggatacatgttaaagtatggtggaagatttgagaattatttctcaaggcatcgtgtaacacatatcatctg |
222450 |
T |
|
| Q |
215 |
caccaatcttcctcacactaaacttaagaatctcagagctttcagtgcagggcttcctattgtaaaaccaacttggattttagattctgttgcttctaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222449 |
caccaatcttcctcacactaaacttaagaatctcagagctttcagtgcagggcttcctattgtaaaaccaacttggattttagattctgttgcttctaat |
222350 |
T |
|
| Q |
315 |
cgactattgacttgggcgccttatcaacttcaccagctttctaataaccaacaaccaaaactatccaaattcttcacattcacaactaccaaaaattctg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222349 |
cgactattgacttgggcgccttatcaacttcaccagctttctaataaccaacaaccaaaactatccaaattcttcacattcacaactaccaaaaattctg |
222250 |
T |
|
| Q |
415 |
aggattccctttgtcaagtagagtcagacattgaagattcatttattagtgctggaaaatcagagggtagacattcatcccaagtcggggatgtggttga |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
222249 |
aggattccctttgtcaagtagagtcagacattgaagattcatttattagtgctggaaaatcagagggtagacattcatccgaagtcggggatgtggttga |
222150 |
T |
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| Q |
515 |
atctagcaggcaaatcattaccgaagctgatgacaatgtctcggagaatactgatacaattatgatggaagagctgctggctagtgctggaattaagtgt |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222149 |
atctagcaggcaaatcattaccgaagctgatgacaatgtctcggagaatactgatgcaattatgatggaagagctgctggctagtgctggaattaagtgt |
222050 |
T |
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| Q |
615 |
gatgaagaagat |
626 |
Q |
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|||||||||||| |
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| T |
222049 |
gatgaagaagat |
222038 |
T |
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