View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_3 (Length: 535)
Name: NF14889_low_3
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Original strand, 29578638 - 29579142
Alignment:
| Q |
17 |
agtttcaagagaaagctagagcggtaaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcc |
116 |
Q |
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| T |
29578638 |
agtttcaagagaaagctagagcggtaaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcc |
29578737 |
T |
|
| Q |
117 |
tgcagacaaaatgaagatcgattctgtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagacttt |
216 |
Q |
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| T |
29578738 |
tgcagacaaaatgaagatcgattctgcgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagacttt |
29578837 |
T |
|
| Q |
217 |
ttaaaggagcttgaaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatgaatttacagcatgagttaagtaa |
316 |
Q |
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| T |
29578838 |
ttaaaggagcttgaaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttgagcaatgaatttacagcatgagttaagtaa |
29578937 |
T |
|
| Q |
317 |
tgaaggataacagtgttagttccataccgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggagcttgaaagatcaa |
416 |
Q |
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| T |
29578938 |
tgaaggataacagtgttagttccatatcgactcttggagacaaagtagtgcaaaaagaaacatgtgtttatggactttatgaaggagcttgaaagatcaa |
29579037 |
T |
|
| Q |
417 |
caaaagttacatgctctgatgacgaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtacttgatgaagctgt |
516 |
Q |
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| T |
29579038 |
caaaagttacatgctctgatgacgaaattgatttggaatattttagttttttatcattttcttatcaatttcagtttcctcatgtacttgatgaagctgt |
29579137 |
T |
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| Q |
517 |
ctgtg |
521 |
Q |
| |
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|||| |
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| T |
29579138 |
ttgtg |
29579142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 29582820 - 29583174
Alignment:
| Q |
30 |
agctagagcggtaaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatg |
129 |
Q |
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||||||||| | ||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |
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| T |
29582820 |
agctagagcaatgaatgctttggacgactatctttacaaaatgagtaaagtaatggaggataacaacgttagttccatggtgactcctgcagacaaaaca |
29582919 |
T |
|
| Q |
130 |
aagatcgattctgtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttg |
229 |
Q |
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| T |
29582920 |
aagatcaattctgcaattatgaacggaaaaagtttgattgataatcatggcaaccagcacaaagaagcatgcgtgtttgtggactttttgaaggagcttc |
29583019 |
T |
|
| Q |
230 |
aaatcatctttgaatcctcgttgaataaaataaacaaaggtttcaagagaaagtttaagcaatga-----------------atttacagcatgagttaa |
312 |
Q |
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| T |
29583020 |
aaggcatctttgaggcaatgttaaacaagatcaacaaaggttccaagattaagttagagcaatgaattctttagacgactacatttacaacatgagttaa |
29583119 |
T |
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| Q |
313 |
gtaatgaaggataacagtgttagttccataccgactcttggagacaaagtagtgc |
367 |
Q |
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| T |
29583120 |
gtaatgaaggataacagtgttggttctattctgagtcttggagacaaaatagtgc |
29583174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 8544813 - 8544616
Alignment:
| Q |
42 |
aaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgctggctcctgcagacaaaatgaagatcgattct |
141 |
Q |
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|||||||||||| ||||||||||||| ||| ||||||||| ||||| | |||||| ||||| ||| || |||| |||||||||||| ||| ||||| |
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| T |
8544813 |
aaatgctttggagtattatctttacaatgtgaggaaagtaatgaaggatgattgtgttaattccaagctcgcccctgtagacaaaatgaatatcaattct |
8544714 |
T |
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| Q |
142 |
gtgattatgaatggaaagagtttgattgataatcatggcaaccagcacaatgaaacatacgtgtttgtagactttttaaaggagcttgaaatcatctttg |
241 |
Q |
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| || || || ||||| |||||||||||||| |||||| || | || ||| |||||||| |||||||| ||||||||||| | |||||||| |
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| T |
8544713 |
gcaatgataaagggaaaaagtttgattgataa------caaccaacaggaagatgcatttgtgtttgtggactttttgaaggagcttgagagcatctttg |
8544620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 8580878 - 8580815
Alignment:
| Q |
41 |
taaatgctttggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttc |
104 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
8580878 |
taaatgctttggacgattatctttacaaagtgaggaaagtaatggaggataattgtgttagttc |
8580815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 8601143 - 8601083
Alignment:
| Q |
50 |
tggaagattatctttacaaaacgagtaaagtaatggaggataacagtgttagttccatgct |
110 |
Q |
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|||| ||||||||||||| | ||| ||||||||| ||||| | ||||||||||||||||| |
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| T |
8601143 |
tggatgattatctttacactatgagaaaagtaatgaaggatgatagtgttagttccatgct |
8601083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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