View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_4 (Length: 491)
Name: NF14889_low_4
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 53490853 - 53491123
Alignment:
| Q |
5 |
ttcatgtggttatttataagatcatttttcaattaataatagtcatttacttttttgttacaatcacaaaggtaaaataaataaaa-caccttagaaata |
103 |
Q |
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| T |
53490853 |
ttcatgtggttatttataagatcatttttcaattaataatagtcatttacttttttgttacgatcataaaggtaaaaaaattaaaaacaccttagaaata |
53490952 |
T |
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| Q |
104 |
tcaaacctcagtctccaagtgccaaaatttagtcnnnnnnntcacgcaagcacaagttgaaaagaaaaatattagaatatgttccttgaaaccaaaatat |
203 |
Q |
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| T |
53490953 |
tcaaacctcagtctccaagtgccaaaatttagtcaaaaaaatctcgcaagcacaagttgaaaagaaaaatattagaatatgttccttgaaaccaaaatat |
53491052 |
T |
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| Q |
204 |
ttaacgaacaaataaacatacacatgcatatgtgaatggtccatatattgaaaaggatagagcgattctaa |
274 |
Q |
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| T |
53491053 |
ttaacgaacaaataaacatacacatgcatttgtgaatggtccatatattgaaaaggatagagcgattctaa |
53491123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 333 - 474
Target Start/End: Original strand, 53491871 - 53492012
Alignment:
| Q |
333 |
atactatatagtccatgtaattggaaggaagggagataggacctgatcaaaagcggtgaacgttttacacattaaatgtgtgactggctaatgggtatac |
432 |
Q |
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| T |
53491871 |
atactatatagtccatgtaattggaaggaagggagataggacctgatcaaaggcggtgaacgttttacacattaaatgtgtgactggctaatgggtatac |
53491970 |
T |
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| Q |
433 |
agcatttcatgcacaaacgtgtgtgatgatatcatttgggtg |
474 |
Q |
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| T |
53491971 |
agcatttcatgcacaaacgtgtgtgatgatatcatttgggtg |
53492012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 37187886 - 37187984
Alignment:
| Q |
376 |
tgatcaaaagcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtg |
474 |
Q |
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|||||||| |||||||| ||||| |||||||| ||| || ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
37187886 |
tgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtg |
37187984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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