View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_low_8 (Length: 288)
Name: NF14889_low_8
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 10584993 - 10584724
Alignment:
| Q |
3 |
tgtccgaagacaagacgaaaaatagtgatcaatcagtataaattacatacttttattcaaatactctggattaataagacactattctaattttcaattc |
102 |
Q |
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| T |
10584993 |
tgtctgaagacaagatgaagaatagcgatctatcggtataaattacgtggttttattcaaagactttggattaataagacgctattctaattttcaattc |
10584894 |
T |
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| Q |
103 |
atgaaacaaatctttgaaaaatttaatggatcgcgtcgttgcgaatttttagtatatgaagtatgtaatcccaattaataagatatacaagtcttgcaaa |
202 |
Q |
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| T |
10584893 |
ttgaaacaaatctatgaaaaattcaatgtatcgcgtcattgcgaatttt-agtatatgaagcatctcatcccaattaataagatatgcaagtcttgcaaa |
10584795 |
T |
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| Q |
203 |
acttttttagttgtcatgtttccaaatagctttattttcattattcattagcgaatagaaaatgactaaac |
273 |
Q |
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| T |
10584794 |
acttttttagttgtcatgcttccaaatagctttattttcattattccttatctaatagaaaatgactaaac |
10584724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 10578637 - 10578560
Alignment:
| Q |
23 |
aatagtgatcaatcagtataaattacatacttttattcaaatactctggattaataagacactattctaattttcaat |
100 |
Q |
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| T |
10578637 |
aatagtgagcaatcaatataaattacatgcttgtattcaaatactttgaattaataagacgatattctaattttcaat |
10578560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 10578523 - 10578464
Alignment:
| Q |
149 |
ttttagtatatgaagtatgtaatcccaattaataagatatacaagtcttgcaaaactttt |
208 |
Q |
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| T |
10578523 |
ttttagtatatgaagcatctcatcccaattaacaagatatgcaagtcttgcaaaactttt |
10578464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 10500992 - 10501084
Alignment:
| Q |
149 |
ttttagtatatgaagtatgtaatcccaattaataagatatacaagtcttgcaaaa-cttttttagttgtcatgtttccaaatagctttatttt |
240 |
Q |
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| T |
10500992 |
ttttcgtatatgaagcatctcatcccaattcacaggatatgcaagtctaccaaaagcatttttagttgtcatgtttcaaaatagctttctttt |
10501084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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