View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1488_high_12 (Length: 238)
Name: NF1488_high_12
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_high_12 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0041 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 95904 - 95683
Alignment:
| Q |
17 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95904 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
95805 |
T |
|
| Q |
117 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95804 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
95705 |
T |
|
| Q |
217 |
cgttgatgccagcaacaccatc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
95704 |
cgttgatgccagcaacaccatc |
95683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 87888 - 87667
Alignment:
| Q |
17 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
116 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | || |
|
|
| T |
87888 |
ataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtt |
87789 |
T |
|
| Q |
117 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87788 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
87689 |
T |
|
| Q |
217 |
cgttgatgccagcaacaccatc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
87688 |
cgttgatgccagcaacaccatc |
87667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40870378 - 40870599
Alignment:
| Q |
17 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870378 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
40870477 |
T |
|
| Q |
117 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870478 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
40870577 |
T |
|
| Q |
217 |
cgttgatgccagcaacaccatc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40870578 |
cgttgatgccagcaacaccatc |
40870599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40878395 - 40878616
Alignment:
| Q |
17 |
ataaacatgcctgaaatgccacttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatt |
116 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | || |
|
|
| T |
40878395 |
ataaacgtgcctgaaatgccacttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtt |
40878494 |
T |
|
| Q |
117 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878495 |
tctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggaca |
40878594 |
T |
|
| Q |
217 |
cgttgatgccagcaacaccatc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40878595 |
cgttgatgccagcaacaccatc |
40878616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
102 |
cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
191 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
96 |
tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa |
175 |
Q |
| |
|
|||| |||||| |||||| | || |||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
| Q |
120 |
gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
190 |
Q |
| |
|
||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||||||| |
|
|
| T |
42730210 |
gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
137 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
191 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University