View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_high_14 (Length: 209)
Name: NF1488_high_14
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 43213552 - 43213715
Alignment:
| Q |
18 |
aaggactactgcaatgccacttgaatgcagtaaaatacaacggtttacaataaatatttattatgacgtaacttgatctatttggttgatcatatttaat |
117 |
Q |
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| T |
43213552 |
aaggactactgcaatgccacttgaatgcagtaaaatacaacggtttacaataaa----tattatgacgtaacttgatctatttaattgatcatatttaat |
43213647 |
T |
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| Q |
118 |
gggttaatatttgttgttgttgttgaataagcaaatttagttgagtgttttttaagacacacgagggagaa |
188 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43213648 |
gggttaatat---ttgttgttgttgaataagcaaatttagttgagtgttttttaagacacacaagggagaa |
43213715 |
T |
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