View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_high_6 (Length: 384)
Name: NF1488_high_6
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 42492418 - 42492071
Alignment:
| Q |
11 |
cacagaacataagcatccttcttataatgcttgtgttataataaataaaatagcttgaaaaaagttgtgtaaggaactggttgcagaaagacctcttgaa |
110 |
Q |
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| T |
42492418 |
cacagaacataagcatccttcttataatgcttgtgttataataaataaagtagcttgaaaaaagttgtgtaacgaactggttgcagaaagac-------- |
42492327 |
T |
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| Q |
111 |
gattctaatataaatctcaaaattcctctaatccgaaaaagaagctagcatagtatcaaatgccttttcaaacagaatgtttaagcaggaaattgacgtt |
210 |
Q |
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| T |
42492326 |
gattctaatataaatctcaaaattcctctaatccgaaaaagaagctagcatagtatcaaatgccttttcaaacagaatgtttgagcaggaaattgacatt |
42492227 |
T |
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| Q |
211 |
ttaataaattcgccgccgcactctcctctgatccttccagtgaccagcactctcggcattgcaatgcatggtccagtacatacagggtgcagcagtatcg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42492226 |
ttaataaattcgccgccgcactctcctctgatccttccagtgaccagcactctcggcattgcaatgcatggtccagtacatacagggtgcagcagtatcg |
42492127 |
T |
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| Q |
311 |
caaacataacagtaacactgtgtccaaagattgccacaaagtcagtatgagggata |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42492126 |
caaacataacagtaacactgtgtccaaagattgccacaaagtcagtatgagggata |
42492071 |
T |
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