View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_high_9 (Length: 330)
Name: NF1488_high_9
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 41658405 - 41658717
Alignment:
| Q |
1 |
agaagtagaaatatatcatatcacatatcaatcacattttacatacattgaaagacaaccacatcaccccaactatagttctagattaagatctgcagac |
100 |
Q |
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| T |
41658405 |
agaagtagaaatatatcatatcacatatcaatcatattttacatacattgaaagacaaccacaacatcccaactatagttctagattaagatctgcagac |
41658504 |
T |
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| Q |
101 |
tgcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatcgaatatcaattactgctgtgcaat |
200 |
Q |
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| T |
41658505 |
tgcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatggaatatcaattactgctgtgcaat |
41658604 |
T |
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| Q |
201 |
atcaaagatcacaacataatagtagcaactacaaccacacaagtcagaatctc-aaagaacataacatataccaccatgctagctattatagtggcatta |
299 |
Q |
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| T |
41658605 |
atcaaagatcacaacataatagtagcaactacaaccacacaagtcagaatctcaaaagaacataacatataccaccatgctagctattatagcggcatta |
41658704 |
T |
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| Q |
300 |
agaaagatcatat |
312 |
Q |
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| T |
41658705 |
aggaagatcatat |
41658717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41657260 - 41657324
Alignment:
| Q |
1 |
agaagtagaaatatatcatatcacatatcaatcacattttacatacattgaaagacaaccacatc |
65 |
Q |
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| T |
41657260 |
agaagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatc |
41657324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 41657325 - 41657411
Alignment:
| Q |
102 |
gcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatcgaatatcaatta |
188 |
Q |
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| T |
41657325 |
gcagtcaaccatagttcaaaactgagcacggtaacagaaattgctagttctaaggcctctgcaattagggttatggaatatcaatta |
41657411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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