View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_low_1 (Length: 467)
Name: NF1488_low_1
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 15592388 - 15592059
Alignment:
| Q |
17 |
aatcttgattatatctcacaggaggcactggaaaatttggaatggtacactactttttgagatgacatggagaaattagaaaagatcgtcaaattcgatg |
116 |
Q |
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| T |
15592388 |
aatcttgattatatcccaaaggaggcactagaaaatttggaatggttcactactttttgggatgacatggagaaattagaaaagatcatcaaattcgatg |
15592289 |
T |
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| Q |
117 |
aatcaacaggtgaaggaaacacaaaatcaaatgttgaaataaatgaagatcataacattgatacaagtttgcctaatgatggaactaaggcattcaaaga |
216 |
Q |
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| T |
15592288 |
aatcaagaggtgaaggaaacacaaaatcaaatgttcaaataaataaagatcagaacaatgatacaagtttgcctagtgatggaactaagacattcaaaga |
15592189 |
T |
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| Q |
217 |
agagagatcgttgcagccattgtgaccaaagatactactcaatgcatctggattacttacgatacaagttacaccattgattagaattttattttaatag |
316 |
Q |
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| T |
15592188 |
agagagatcgttgcagccattttgaccaaagatactactcaatgcatctggattacttacgatacaagttaatccattgattagaattttattttaatag |
15592089 |
T |
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| Q |
317 |
atatcattgaattagcattagttagattga |
346 |
Q |
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| T |
15592088 |
atatcattgaattcgcattagttagattga |
15592059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 15637509 - 15637390
Alignment:
| Q |
20 |
cttgattatatctcacaggaggcactggaaaatttggaatggtacactactttttgagatgacatggagaaattagaaaagatcgtcaaattcgatgaat |
119 |
Q |
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|||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || | ||||||||||||| |
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| T |
15637509 |
cttgattatatcccacaggaagcactagaaaatttggaatggtatactactttttgggatgacatggagaaattagaaaaggtcttaaaattcgatgaat |
15637410 |
T |
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| Q |
120 |
caacaggtgaaggaaacaca |
139 |
Q |
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||| ||||||||||||||| |
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| T |
15637409 |
caatgggtgaaggaaacaca |
15637390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 15587567 - 15587468
Alignment:
| Q |
20 |
cttgattatatctcacaggaggcactggaaaatttggaatggtacactactttttgagatgacatggagaaattagaaaagatcgtcaaattcgatgaat |
119 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||| ||||||| |
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| T |
15587567 |
cttgattatatcccacaggaggcactagaaaatttggaatggtacactactttttgggatgacatggagaaattagacaaggtcatcaaattggatgaat |
15587468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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