View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1488_low_11 (Length: 282)

Name: NF1488_low_11
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1488_low_11
NF1488_low_11
[»] chr5 (9 HSPs)
chr5 (144-268)||(29568361-29568485)
chr5 (144-268)||(29168239-29168363)
chr5 (145-268)||(1758133-1758256)
chr5 (145-268)||(29425281-29425404)
chr5 (145-252)||(29569708-29569815)
chr5 (144-252)||(27918634-27918742)
chr5 (18-67)||(1758018-1758067)
chr5 (18-67)||(29568559-29568608)
chr5 (18-67)||(29569867-29569916)
[»] chr4 (8 HSPs)
chr4 (145-273)||(27521322-27521450)
chr4 (145-268)||(18986085-18986208)
chr4 (150-268)||(27461990-27462108)
chr4 (150-268)||(27482129-27482247)
chr4 (18-67)||(27461870-27461919)
chr4 (18-67)||(27482009-27482058)
chr4 (18-67)||(27521516-27521565)
chr4 (18-67)||(18985970-18986019)
[»] chr3 (2 HSPs)
chr3 (144-252)||(25518468-25518576)
chr3 (18-67)||(25518351-25518400)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 29568485 - 29568361
Alignment:
Q  144 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568485 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 29568386  T
Q  244 aatgctcttagccactgtgtctctg 268  Q
    ||||||||||||| |||||||||||    
T  29568385 aatgctcttagccgctgtgtctctg 29568361  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 29168239 - 29168363
Alignment:
Q  144 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 243  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29168239 ttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtggg 29168338  T
Q  244 aatgctcttagccactgtgtctctg 268  Q
    ||||||||||||  |||||||||||    
T  29168339 aatgctcttagctgctgtgtctctg 29168363  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 1758133 - 1758256
Alignment:
Q  145 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 244  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1758133 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcggga 1758232  T
Q  245 atgctcttagccactgtgtctctg 268  Q
    |||||||||||| |||||||||||    
T  1758233 atgctcttagccgctgtgtctctg 1758256  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 29425281 - 29425404
Alignment:
Q  145 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 244  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  29425281 tctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtggga 29425380  T
Q  245 atgctcttagccactgtgtctctg 268  Q
    |||||||||||| |||||||||||    
T  29425381 atgctcttagccgctgtgtctctg 29425404  T

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Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 29569815 - 29569708
Alignment:
Q  145 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 244  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29569815 tctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggca 29569716  T
Q  245 atgctctt 252  Q
    ||||||||    
T  29569715 atgctctt 29569708  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 27918634 - 27918742
Alignment:
Q  144 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 243  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27918634 ttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggc 27918733  T
Q  244 aatgctctt 252  Q
    || ||||||    
T  27918734 aacgctctt 27918742  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 1758018 - 1758067
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758018 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 1758067  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 29568608 - 29568559
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568608 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 29568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 29569916 - 29569867
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29569916 agaatccattttgatccctcacaaacacaaacaatccatgattattccaa 29569867  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 27521450 - 27521322
Alignment:
Q  145 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 244  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27521450 tctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 27521351  T
Q  245 atgctcttagccactgtgtctctgctcct 273  Q
    |||||||||||| ||||||||||| ||||    
T  27521350 atgctcttagccgctgtgtctctgatcct 27521322  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 18986085 - 18986208
Alignment:
Q  145 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 244  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18986085 tctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtggga 18986184  T
Q  245 atgctcttagccactgtgtctctg 268  Q
    || ||||||||| |||||||||||    
T  18986185 atactcttagccgctgtgtctctg 18986208  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 27461990 - 27462108
Alignment:
Q  150 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 249  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  250 cttagccactgtgtctctg 268  Q
    ||||||| |||||||||||    
T  27462090 cttagccgctgtgtctctg 27462108  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 27482129 - 27482247
Alignment:
Q  150 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 249  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  250 cttagccactgtgtctctg 268  Q
    ||||||| |||||||||||    
T  27482229 cttagccgctgtgtctctg 27482247  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27461870 - 27461919
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27461870 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27461919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27482009 - 27482058
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27482009 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27482058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27521565 - 27521516
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521565 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 18985970 - 18986019
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18985970 agaatccatggtgatccctcacaaacagaaacaatccatgattattccaa 18986019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 25518468 - 25518576
Alignment:
Q  144 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 243  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25518468 ttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggt 25518567  T
Q  244 aatgctctt 252  Q
    |||||||||    
T  25518568 aatgctctt 25518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 25518351 - 25518400
Alignment:
Q  18 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518351 agaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 25518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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