View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_low_2 (Length: 459)
Name: NF1488_low_2
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 8999669 - 8999231
Alignment:
| Q |
10 |
attattcttcttttggtaaccaaaaatatcttgtgcgtgcaattataaagacaaattatttcaaggtaactgagatctatttaagggattgatatctccc |
109 |
Q |
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| T |
8999669 |
attattcttcttttggtaaccaaaaatatcttgtgcgtgcaattataaagataaattctctcaaggtaactgagatctatttaagggattgacatctccc |
8999570 |
T |
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| Q |
110 |
aacgaataatttttcatacgcatcggtcagaaaatnnnnnnnnnn-cacgaatatatttatttggaaaaacaaatcaaatatactaaaggaaataataag |
208 |
Q |
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| T |
8999569 |
aacgaataatttttcatacgcattggccagaaaataaaataaaaaacacgaatatatttatttggaaaaacaaatcaaatatactaaaggaaataataag |
8999470 |
T |
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| Q |
209 |
agagagtgtg----tactgtgtatatgtttctattaaagggaggatcatctaataatttgggaccaaatcaaaattttcttttttagtagcttattgagt |
304 |
Q |
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| T |
8999469 |
agagagtgagagagtactgtgtatatgtttctattaaagggaggatcatctaataatttgggaccaaatcaaaattttcttttatagttgcttattgagt |
8999370 |
T |
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| Q |
305 |
gttctttcattcttctatggaaacgtcatactaacaaaacacaacgacacacctaagagaatcaatgaaattaagaaagtagaagaatctaacaagctgg |
404 |
Q |
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| T |
8999369 |
gttctttcattcttctatggaaacatcatattaacaaaacacaacgacacacctaagagaatcaatgaaattaagaaagtagaagaatctaacaagctgg |
8999270 |
T |
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| Q |
405 |
atgataccttctcaaaacgcaaattaggactcttcaaca |
443 |
Q |
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| T |
8999269 |
atgataccttctcaaaacgcaaattaggactcttcaaca |
8999231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 8167603 - 8167567
Alignment:
| Q |
407 |
gataccttctcaaaacgcaaattaggactcttcaaca |
443 |
Q |
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| T |
8167603 |
gataccttctcaaaacgcaaactagggctcttcaaca |
8167567 |
T |
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