View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1488_low_8 (Length: 373)
Name: NF1488_low_8
Description: NF1488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1488_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 44372846 - 44372497
Alignment:
| Q |
18 |
aaaccttttcaaagccttaacttaggtagtnnnnnnnccaaacaacattctcaaaccaaacatgttgactcacgtttgcaaggtaaatccatgacaacct |
117 |
Q |
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| T |
44372846 |
aaaccttttcaaagccttaacttaggtagtaaaaaaaccaaacaacattctcaaaccaaacatgttgactcacgtttgcaaggtaaatccatgacaacct |
44372747 |
T |
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| Q |
118 |
cagctatatttgattcatcaaaacccaacaacaacacacaccaaacgaaaatcacagtactaacaccaaatcatgaaaaagagagtgnnnnnnngcattc |
217 |
Q |
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| T |
44372746 |
cagctatatttgattcatcaaaacccaacaacaacacacaccaaacgaaaatcacagtactaacaccaaatcatgaaaaagagagtgtttttttgcattc |
44372647 |
T |
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| Q |
218 |
taagaggacccttaaagagaaaccacctcaaaaacctagttcagaattagaaaggtggaaacttcaggggttgttaaagaatgagaagaaggtggttgag |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
44372646 |
taagaagacccttaaagagaaaccacctcaaaaacctagttcagaattggaaaggtggaaacttcaggggttgttgaagaatgagaaaaaggtggttgag |
44372547 |
T |
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| Q |
318 |
gttgaaaagtcaagaaaagtaactgttgtggaaaaagaaggtgatgatgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44372546 |
gttgaaaagtcaagaaaagtaactgttgtggaaaaagaaggtggtgatgt |
44372497 |
T |
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