View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14890_high_4 (Length: 211)

Name: NF14890_high_4
Description: NF14890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14890_high_4
NF14890_high_4
[»] chr2 (14 HSPs)
chr2 (1-206)||(34176765-34176968)
chr2 (118-186)||(16576253-16576321)
chr2 (118-186)||(16863461-16863529)
chr2 (118-184)||(2248940-2249006)
chr2 (4-159)||(38576797-38576948)
chr2 (120-175)||(34176650-34176705)
chr2 (118-183)||(35370403-35370468)
chr2 (119-159)||(38333873-38333913)
chr2 (118-181)||(13712757-13712820)
chr2 (127-186)||(38576939-38576998)
chr2 (151-193)||(17606623-17606665)
chr2 (109-186)||(28282646-28282723)
chr2 (118-186)||(9050127-9050195)
chr2 (119-159)||(35371117-35371157)
[»] chr5 (15 HSPs)
chr5 (109-199)||(2243305-2243395)
chr5 (4-186)||(22780177-22780355)
chr5 (127-193)||(7215463-7215529)
chr5 (133-193)||(41264393-41264453)
chr5 (118-193)||(973116-973191)
chr5 (4-57)||(41264437-41264491)
chr5 (123-168)||(972839-972884)
chr5 (129-186)||(17736756-17736813)
chr5 (122-194)||(22780338-22780410)
chr5 (118-186)||(37077765-37077833)
chr5 (118-193)||(14138550-14138625)
chr5 (131-182)||(39730312-39730363)
chr5 (4-82)||(7215401-7215479)
chr5 (1-55)||(7982340-7982394)
chr5 (130-159)||(7215325-7215354)
[»] chr8 (9 HSPs)
chr8 (4-183)||(35574645-35574820)
chr8 (108-186)||(12736049-12736127)
chr8 (1-193)||(32166630-32166815)
chr8 (118-193)||(29969103-29969177)
chr8 (123-186)||(37010347-37010410)
chr8 (135-193)||(6630377-6630435)
chr8 (127-193)||(31475052-31475118)
chr8 (118-199)||(7590304-7590385)
chr8 (1-50)||(40700907-40700956)
[»] chr6 (4 HSPs)
chr6 (129-201)||(32047190-32047262)
chr6 (127-188)||(23577165-23577226)
chr6 (9-146)||(26236689-26236822)
chr6 (118-182)||(32342605-32342669)
[»] chr1 (15 HSPs)
chr1 (107-183)||(52432827-52432903)
chr1 (118-199)||(38839650-38839729)
chr1 (18-78)||(52432911-52432971)
chr1 (102-183)||(46080962-46081041)
chr1 (5-186)||(67991-68170)
chr1 (119-191)||(3231964-3232036)
chr1 (15-75)||(7104340-7104400)
chr1 (118-193)||(34601605-34601679)
chr1 (118-183)||(3232133-3232198)
chr1 (129-186)||(52432677-52432734)
chr1 (129-201)||(10775179-10775251)
chr1 (137-186)||(3367806-3367855)
chr1 (118-159)||(35956988-35957029)
chr1 (118-186)||(42819626-42819694)
chr1 (118-186)||(49897875-49897943)
[»] chr7 (12 HSPs)
chr7 (136-192)||(8354388-8354444)
chr7 (118-186)||(23944081-23944149)
chr7 (118-186)||(34891538-34891606)
chr7 (102-188)||(22593572-22593655)
chr7 (126-193)||(27651505-27651571)
chr7 (10-80)||(31152836-31152906)
chr7 (109-186)||(34891361-34891438)
chr7 (123-159)||(4674918-4674954)
chr7 (17-80)||(31171397-31171460)
chr7 (129-183)||(32138891-32138945)
chr7 (118-159)||(29152356-29152397)
chr7 (135-191)||(3191564-3191620)
[»] chr3 (4 HSPs)
chr3 (116-186)||(42091793-42091863)
chr3 (118-182)||(39341204-39341268)
chr3 (118-180)||(54437811-54437873)
chr3 (131-181)||(48646430-48646479)
[»] chr4 (7 HSPs)
chr4 (118-186)||(15131577-15131645)
chr4 (118-179)||(25062495-25062556)
chr4 (4-55)||(22050916-22050967)
chr4 (109-182)||(4115389-4115462)
chr4 (1-50)||(20512792-20512841)
chr4 (127-156)||(25234232-25234261)
chr4 (118-186)||(20512670-20512738)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34176765 - 34176968
Alignment:
Q  1 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  34176765 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttttcattaggattgaattatccccaattcatcattggaaaatctaggcatcat 34176864  T
Q  101 tgataggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176865 tgataggattttttctccttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgatattcatcctcttca 34176962  T
Q  201 tctcag 206  Q
    | ||||    
T  34176963 tttcag 34176968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 16576253 - 16576321
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||| | ||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||    
T  16576253 cttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 16576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 16863461 - 16863529
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||| |||||||    
T  16863461 cttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgat 16863529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 2249006 - 2248940
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtg 184  Q
    |||| |||||||||||||||||||||||| ||||| |||||| | ||||||||| ||| ||||||||    
T  2249006 cttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtg 2248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 38576948 - 38576797
Alignment:
Q  4 aacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgattga 103  Q
    ||||| |||| | ||||||||||||  ||||||| |||||||||||||||||| | | ||||| ||||||||||| |  ||  ||| ||||| | || ||    
T  38576948 aacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggcctcatcga 38576850  T
Q  104 taggattttttctccttacaattagttaccattttcatctcaagaacatcaaactt 159  Q
    || | ||||||   |||||||| |||||||||||||||||||| |  |||||||||    
T  38576849 taaggtttttt---cttacaatcagttaccattttcatctcaatataatcaaactt 38576797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 34176650 - 34176705
Alignment:
Q  120 tacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcatt 175  Q
    |||||| ||||||||||||||||| ||||| ||||||||| | |||||||||||||    
T  34176650 tacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcatt 34176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 35370403 - 35370468
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    |||||||| |||||||||||| |||||||||| | ||||||| | | ||| |||||||||||||||    
T  35370403 cttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgt 35370468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 38333913 - 38333873
Alignment:
Q  119 ttacaattagttaccattttcatctcaagaacatcaaactt 159  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  38333913 ttacaattagttactattttcatctcaagaacatctaactt 38333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 13712820 - 13712757
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacat 181  Q
    ||||| || ||||||||||| ||||| ||||||||||||||| |  |||||||| |||||||||    
T  13712820 cttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 38576998 - 38576939
Alignment:
Q  127 agttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||||||||||||||| |||||||| ||| || | |||||  |||||||||||||||||    
T  38576998 agttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgat 38576939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 17606665 - 17606623
Alignment:
Q  151 atcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatc 17606623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 28282646 - 28282723
Alignment:
Q  109 ttttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||| ||||||||    ||||||||||||||| | |||||||||||| |  |||| |||||||||| |||||||    
T  28282646 ttttttcttcttacaatcgaataccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgat 28282723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 9050195 - 9050127
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||| || ||||||||||||||| | ||||||| ||||||| | ||||| | ||||||||||| ||||    
T  9050195 cttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgat 9050127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 35371117 - 35371157
Alignment:
Q  119 ttacaattagttaccattttcatctcaagaacatcaaactt 159  Q
    ||||||| | ||||||||||||| |||||||||||||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaactt 35371157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 2243395 - 2243305
Alignment:
Q  109 ttttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| | |||| |||||    
T  2243395 ttttttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttc 2243305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 22780355 - 22780177
Alignment:
Q  4 aacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgattga 103  Q
    ||||| ||||||||||| ||||||||| | |||| ||||||| ||||||||||   | ||||| | |||||||||| ||||  |||  | || | ||||     
T  22780355 aacatgtgatcttcatccctttcgttttagaatcaaatcatagttgtcattagggataaattacctccaattcatcgttgggtaatgcatgcttcattgg 22780256  T
Q  104 taggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||| |||||     ||||||| |||||||||||| || |||| |||||||||||| | ||||| | ||||||||||||||||    
T  22780255 taggtttttta----ttacaatcagttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtgat 22780177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 7215529 - 7215463
Alignment:
Q  127 agttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||| |||||||| |||||||||| |||||| | ||| |||||||||||||||||||| ||||||    
T  7215529 agttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatc 7215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 41264393 - 41264453
Alignment:
Q  133 cattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||||||||||||||||| |||||| | ||| || ||||||||||||||||| ||||||    
T  41264393 cattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatc 41264453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 973116 - 973191
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||||||||||| |||||| ||||||| ||||| ||| || | ||||| ||| |||||||||||||| ||||||    
T  973116 cttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatc 973191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 41264437 - 41264491
Alignment:
Q  4 aacatatgatcttcatctctttcgtt-tcataatcgaatcatatttgtcattaga 57  Q
    ||||| |||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  41264437 aacatgtgatcttcatctctttcgttatcataatcgaatcataattgttattaga 41264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 972839 - 972884
Alignment:
Q  123 aattagttaccattttcatctcaagaacatcaaacttgtacatctt 168  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttcttcatctt 972884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 17736813 - 17736756
Alignment:
Q  129 ttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||||||||| || || |||||| | ||||||||||| ||||||||||||    
T  17736813 ttaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgat 17736756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 22780410 - 22780338
Alignment:
Q  122 caattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcc 194  Q
    |||| ||| |||||||||||||||| ||||  |||||| | ||| | |||||||||||||||||| |||||||    
T  22780410 caatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatcc 22780338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 37077765 - 37077833
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||| ||||| |||||||||||||| ||||||||| || |  || || |||||||||||||||||    
T  37077765 cttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgat 37077833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 14138550 - 14138625
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||||| | ||||||||||||||| ||||| |||||||||   |||||  |||||||||||||| || ||||||    
T  14138550 cttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatc 14138625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 39730363 - 39730312
Alignment:
Q  131 accattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatg 182  Q
    ||||||||||||||||||||||||||||| | |||||  |||||| ||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 7215479 - 7215401
Alignment:
Q  4 aacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcatt 82  Q
    ||||| |||||||||||||||||||| || || || |||||| |||| ||||||  | |||||| | ||||||||||||    
T  7215479 aacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttattagatgtaaattattctcaattcatcatt 7215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7982394 - 7982340
Alignment:
Q  1 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcatta 55  Q
    |||||||| |||| |||||||| || |||||||||| ||||||||||||| ||||    
T  7982394 tttaacatgtgatattcatctcctttgtttcataattgaatcatatttgttatta 7982340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 7215354 - 7215325
Alignment:
Q  130 taccattttcatctcaagaacatcaaactt 159  Q
    ||||||||||||||||||||||||||||||    
T  7215354 taccattttcatctcaagaacatcaaactt 7215325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 35574820 - 35574645
Alignment:
Q  4 aacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgattga 103  Q
    |||||||||| || |||||||||||| || |||||||||||| ||||||||||   | ||||| || |||||||||| || | |||  || | | |||||    
T  35574820 aacatatgattttaatctctttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagacctcattga 35574721  T
Q  104 taggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    |||| |||||    ||||||||||||||| |||||||||| |||||||||||| || | |||||  ||||||||||||||    
T  35574720 tagggttttt----cttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgt 35574645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 12736049 - 12736127
Alignment:
Q  108 attttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||||| |||||||||||||||||||||| ||||| || |||||||||||| | ||||| |||| |||||||||||||    
T  12736049 attttttttccttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgat 12736127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 32166815 - 32166630
Alignment:
Q  1 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgat 100  Q
    |||||||| |||| | ||||||||||||| || ||||||||| || |||||||||||  | |||||  ||||||||||||  | ||||| || || | ||    
T  32166815 tttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgc-tcat 32166717  T
Q  101 tgataggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
     |||||   |||||||   ||| || | ||| ||||||||||||||||||||||||||| | ||||| ||| ||||||||||| || ||||||    
T  32166716 cgatag---tttttct---tactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatc 32166630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 29969103 - 29969177
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||||| ||||||||||||  | ||||||||||||||||| | | ||  |||||||||||||||||||||||||    
T  29969103 cttacaatcagttaccattttttt-tcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatc 29969177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 37010410 - 37010347
Alignment:
Q  123 aattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||||||||||||||| |||||||||||| | ||| |  |||||| ||||||||||    
T  37010410 aattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgat 37010347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 6630435 - 6630377
Alignment:
Q  135 ttttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||| |||||||||||||||||||| | |||||| ||||||||||||||| ||| ||||    
T  6630435 tttttatctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatc 6630377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 31475052 - 31475118
Alignment:
Q  127 agttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||||| ||||| |||||||||||||||||||| | ||||||||| |||||  ||||||| ||||||    
T  31475052 agttactatttttatctcaagaacatcaaacttcttcatcttcttgattcacaatgtgattttcatc 31475118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 7590385 - 7590304
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttc 199  Q
    ||||||||  ||||||| |||||| |||||||||||||| || | |||||||||||||||  ||||| | |||||| |||||    
T  7590385 cttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttcttcattcactatgtggtcttcatcttcttc 7590304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40700907 - 40700956
Alignment:
Q  1 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttgt 50  Q
    ||||||||| ||||||||||||||| |||||| | |||||||||| ||||    
T  40700907 tttaacatacgatcttcatctcttttgtttcagattcgaatcatagttgt 40700956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 32047190 - 32047262
Alignment:
Q  129 ttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttcat 201  Q
    ||||||||||||||||||||||||||||||| | |||||  |||||||||||| |||||||| || |||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcat 32047262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 23577165 - 23577226
Alignment:
Q  127 agttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatat 188  Q
    |||||||||||||||||||| ||||||| |||| | ||||| ||||||||||||| ||||||    
T  23577165 agttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgatat 23577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 26236822 - 26236689
Alignment:
Q  9 atgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcattggaaaatctaggcatgattgatagga 108  Q
    ||||| ||||||||||| |||| | |||||||||||| || | ||||||  | ||||| |||||||| ||||||||| |||  | || | ||||||| |     
T  26236822 atgatattcatctcttttgttttagaatcgaatcatacttattattagaggtaaattacccccaatttatcattggataatgcatgccttattgataagt 26236723  T
Q  109 ttttttctccttacaattagttaccattttcatctcaa 146  Q
    |||||    |||| ||| ||||||||||||||||||||    
T  26236722 ttttt----cttataatgagttaccattttcatctcaa 26236689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 32342605 - 32342669
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatg 182  Q
    |||||||| | ||| |||||||||||||| |||||||||||| | |||||  |||||||||||||    
T  32342605 cttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 52432827 - 52432903
Alignment:
Q  107 gattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    |||||||||| |||||||||||||| ||||||| |||||| |||||||||||| | ||| |||||||||| ||||||    
T  52432827 gattttttcttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgt 52432903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 38839729 - 38839650
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttc 199  Q
    ||||||||||||||  |||||||||||||||||||||||| | | |||||||||||||| ||||||||| || ||| |||||    
T  38839729 cttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatcttcttc 38839650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 52432911 - 52432971
Alignment:
Q  18 atctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcat 78  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||| | |||||||||    
T  52432911 atctctttcgtttcataatcaaatcatatttgtcattagagatgaattacctccaattcat 52432971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 46080962 - 46081041
Alignment:
Q  102 gataggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||||| |||||| | ||||| ||||| |||||||||    
T  46080962 gataggattttttt--cttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 67991 - 68170
Alignment:
Q  5 acatatgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatcat---tggaaaatctaggcatgatt 101  Q
    |||| ||||||||||||||||| || || ||||| |||||| |||||||||||  | ||||| || || ||||||||   | |  |||  |||| | |||    
T  67991 acatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaatta-ccacatttcatcatcattaggtaatgcaggcctcatt 68089  T
Q  102 gataggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||| |||||    |||||||| |||||||||||| || ||||||||||| ||||| | ||||| ||||||| ||||||||||    
T  68090 gataggtttttt----cttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgat 68170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 3231964 - 3232036
Alignment:
Q  119 ttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattca 191  Q
    ||||||| |||| | |||||||||||||||||| ||||||| | ||| |  ||||||||||||||||||||||    
T  3231964 ttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattca 3232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 7104340 - 7104400
Alignment:
Q  15 ttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaatt 75  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | | ||| ||||||||    
T  7104340 ttcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 34601679 - 34601605
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    ||||| ||||||||  ||||||||||||| |||||||||| | | ||||| ||| |||||||||||||||||||||    
T  34601679 cttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatc 34601605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 3232133 - 3232198
Alignment:
Q  118 cttacaattagttaccattttc-atctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    |||||||||||||||||||||| | ||||||||||||  |||| | |||||||||||||||||||||    
T  3232133 cttacaattagttaccattttcaacctcaagaacatc-cacttcttcatcttcttcattcaacatgt 3232198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 52432677 - 52432734
Alignment:
Q  129 ttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||||||||||||||| |||||| | ||||| ||||||| |||| |||||    
T  52432677 ttaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgat 52432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 10775179 - 10775251
Alignment:
Q  129 ttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatcctcttcat 201  Q
    ||||||||||||||| ||||||||||||||| | |||||  ||| |||||||| | || |||||| |||||||    
T  10775179 ttaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatcttcttcat 10775251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 3367806 - 3367855
Alignment:
Q  137 ttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||||||||||| || | |||||  |||||||||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgat 3367855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 35956988 - 35957029
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaactt 159  Q
    |||||||||| |||||||||| ||||||| ||||||||||||    
T  35956988 cttacaattaattaccatttttatctcaaaaacatcaaactt 35957029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 42819626 - 42819694
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||| | ||| |||||||||||||||||||| |||||| | |||| | ||| |||||||| ||||    
T  42819626 cttacaatcaattatcattttcatctcaagaacataaaacttattcatcattttctttcaacatatgat 42819694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 49897875 - 49897943
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||| |||| |||||||||| | ||||||||| || ||||| | | ||| ||||||||||||||||||    
T  49897875 cttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtgat 49897943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 8354444 - 8354388
Alignment:
Q  136 tttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcat 192  Q
    ||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgatattcat 8354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 23944081 - 23944149
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||||||||||| |||||||||||| ||||||||||||||| | | |||  |||||||||||||||||    
T  23944081 cttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgat 23944149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 34891538 - 34891606
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||| |||||||| |||||| ||||||||||||||||| || | ||||| ||||||||||||||||||    
T  34891538 cttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgat 34891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 22593655 - 22593572
Alignment:
Q  102 gataggattttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatat 188  Q
    |||| |||||||| || ||||||| | ||  |||||||||||||||||||||||||||   |||||  |||||||||||||||||||    
T  22593655 gataagattttttttctttacaatcaattgtcattttcatctcaagaacatcaaactt---catctatttcattcaacatgtgatat 22593572  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 27651571 - 27651505
Alignment:
Q  126 tagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattcatc 193  Q
    |||| |||||||||||||||||||||||||||   | ||||| |||||||||||||||||||| ||||    
T  27651571 tagtaaccattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatatccatc 27651505  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 31152906 - 31152836
Alignment:
Q  10 tgatcttcatctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatca 80  Q
    |||||| |||||||||||||||||||||||||| || |||| |||| |  | ||||| |||||||||||||    
T  31152906 tgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatca 31152836  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 34891361 - 34891438
Alignment:
Q  109 ttttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||||||  ||||||||  ||| ||||||||| | ||||||||||||||| |  |||||||||||| ||||||||||    
T  34891361 ttttttctttttacaattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgat 34891438  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 4674918 - 4674954
Alignment:
Q  123 aattagttaccattttcatctcaagaacatcaaactt 159  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4674918 aattagttaccattttcatctcaagaaaatcaaactt 4674954  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 31171460 - 31171397
Alignment:
Q  17 catctctttcgtttcataatcgaatcatatttgtcattagaattgaattatccccaattcatca 80  Q
    |||||||||||||||||||||||||| || |||| |||| |  | ||||| |||||||||||||    
T  31171460 catctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatca 31171397  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 32138945 - 32138891
Alignment:
Q  129 ttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgt 183  Q
    ||||||||||||||| |||||||||||| || | ||||| |||| ||||||||||    
T  32138945 ttaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgt 32138891  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 29152397 - 29152356
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaactt 159  Q
    |||||||| |||||| ||||||||||||| ||||||||||||    
T  29152397 cttacaatcagttactattttcatctcaataacatcaaactt 29152356  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 3191620 - 3191564
Alignment:
Q  135 ttttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgatattca 191  Q
    |||||||||||| ||||||||| || | ||||| ||| |||||||||||||| ||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatcttca 3191564  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 42091863 - 42091793
Alignment:
Q  116 tccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||| ||| |||||||||||||| |||||||||||| | |||||  |||||| ||||||||||    
T  42091863 tccttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 39341204 - 39341268
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatg 182  Q
    ||||| || ||||||||||||||||| ||||| ||||||||| | ||||| ||||||||||||||    
T  39341204 cttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatg 39341268  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 54437811 - 54437873
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaaca 180  Q
    |||||||| |||||||||||| ||||||| |||||||||||| | ||||||| ||||| ||||    
T  54437811 cttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 48646430 - 48646479
Alignment:
Q  131 accattttcatctcaagaacatcaaacttgtacatcttcttcattcaacat 181  Q
    ||||||||||||| ||||||||||||||| | ||| |||||||||||||||    
T  48646430 accattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 15131645 - 15131577
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    ||||| || |||||||||||| ||||||||||||||||| || | ||||| ||||||||| ||||||||    
T  15131645 cttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgat 15131577  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 25062495 - 25062556
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaac 179  Q
    |||||||| | ||||| ||||||||||||||| ||||||||| | |||||||||| ||||||    
T  25062495 cttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaac 25062556  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 22050916 - 22050967
Alignment:
Q  4 aacatatgatcttcatctctttcgtttcataatcgaatcatatttgtcatta 55  Q
    ||||| ||||||||||||| ||| ||||| ||||||||||||||| ||||||    
T  22050916 aacatgtgatcttcatctcattcctttcagaatcgaatcatatttatcatta 22050967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 4115462 - 4115389
Alignment:
Q  109 ttttttctccttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatg 182  Q
    ||||||||  |||| |||| |||||||||| |||| |||||||| |||||| | |||||  |||||||||||||    
T  4115462 ttttttctttttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20512841 - 20512792
Alignment:
Q  1 tttaacatatgatcttcatctctttcgtttcataatcgaatcatatttgt 50  Q
    |||||||| | |||| ||| || |||||||||||||||||||||||||||    
T  20512841 tttaacatgtaatctccatatccttcgtttcataatcgaatcatatttgt 20512792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 25234261 - 25234232
Alignment:
Q  127 agttaccattttcatctcaagaacatcaaa 156  Q
    ||||||||||||||||||||||||||||||    
T  25234261 agttaccattttcatctcaagaacatcaaa 25234232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 20512738 - 20512670
Alignment:
Q  118 cttacaattagttaccattttcatctcaagaacatcaaacttgtacatcttcttcattcaacatgtgat 186  Q
    |||||||||||||| | |||||||||||| ||||| ||  || | ||| ||||||||| ||||||||||    
T  20512738 cttacaattagttatctttttcatctcaaaaacattaagtttcttcatattcttcattgaacatgtgat 20512670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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