View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14890_low_1 (Length: 479)
Name: NF14890_low_1
Description: NF14890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14890_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 42732375 - 42732841
Alignment:
| Q |
1 |
ttgtctcaagttttcattattcaataattctttttgcgttctttacgttaaaaattgttacaaatttctttgtcaacgtagacaacttatgatattatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732375 |
ttgtctcaagttttcattattcaataattctttttgcgttctttacgttaaaaattgttacaaatttctttgtcaacgtagacaacttatgatattatct |
42732474 |
T |
|
| Q |
101 |
ttccttnnnnnnntgatagtattcagacacctttttcccctacatttacgatacctaatcaatcaatcatgtttaaaaacgtggttaactcaattgaatt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42732475 |
ttccttaaaaaaatgatagtattcagacacctttttcccctacatttacgatacctaatcaatcaatcatgtttaaaaacgtggttaactcatttgaatt |
42732574 |
T |
|
| Q |
201 |
aaccatatattttgcatgtgttgactagatatcacacttgtacagaaaattgaatgtccatttttgtattactaaatctcattatgatcacagcgtgttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732575 |
aaccatatattttgcatgtgttgactagatatcacacttgtacagaaaattgaatgtccatttttgtattactaaatctcattatgatcacagcgtgttc |
42732674 |
T |
|
| Q |
301 |
atttaacttatttacttttcatatttgaatgtttaattatttggtctaataatcattcaagta-nnnnnnnnagtcctatattgtatacttaggatcaca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
42732675 |
atttaacttatttacttttcatatttgaatgtttaattatttggtctaataatcattaaagtatttttttttagtcctatattgtatacttaggatcaca |
42732774 |
T |
|
| Q |
400 |
ttcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcactacgatattctt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732775 |
ttcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcactacgatattctt |
42732841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 42745456 - 42745372
Alignment:
| Q |
372 |
agtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcacta |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42745456 |
agtcctatattgtatacttaggatcacattctcatggtccaaatccttcatcatttgatattgaatctgccacaaactctcacta |
42745372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 42754816 - 42754732
Alignment:
| Q |
372 |
agtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcacta |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42754816 |
agtcctatattgtatacttaggatcacattctcatggtccaaatccttcatcatttgatattgaatctgccacaaactctcacta |
42754732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 42720229 - 42720145
Alignment:
| Q |
372 |
agtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcacta |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42720229 |
agtcctatattgtatacttaggatcacattctcatggtccagatccttcatcatttgatattgaatctgccacaaactctcacta |
42720145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 42764648 - 42764554
Alignment:
| Q |
372 |
agtcctatattgtatacttaggatcacattcatatggtccaaatccttcatcatttgatattgaatctgccacaaactctcactacgatattctt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||| || ||||| ||||| ||||||||| |
|
|
| T |
42764648 |
agtcctatattgtatacttaggatcacattctttcggtccaaatccttcatcatttgattttgaacttgcaacgaactcccactatgatattctt |
42764554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University