View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_high_10 (Length: 277)
Name: NF14891_high_10
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 29033947 - 29033694
Alignment:
| Q |
10 |
aatatattataatacgtaagggttgaaattcaaacttcaaacattacacttattcgttttaaaaagtgaatttatacagcatacaagagttatgataatc |
109 |
Q |
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| T |
29033947 |
aatacattataatatgtaagggttgaaattcgaacttcaaacacttcatttatttatttcaaaaaatgaatttatacggcgtacaagagttatgataatc |
29033848 |
T |
|
| Q |
110 |
aaccacaaaaattcatgcacagtaccatacaatgtacccctccacgtagagagaccatgcttgcatgcataccgagtcacaataaaatgattaa-aaaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
29033847 |
aaccacaaaaattcatgcacagtaccatacaatgtatccctccacgtagagagaccatgcttgcatgcatacccagtcacaataaaatgattaaaaaaat |
29033748 |
T |
|
| Q |
209 |
gcatcctggcaactccgttgtccattagttttttatgttgac-aatcatttttg |
261 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29033747 |
gcatcctggcaaatccgttgtccattagttttttatgttgactaatcatttttg |
29033694 |
T |
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