View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_high_2 (Length: 664)
Name: NF14891_high_2
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 359 - 664
Target Start/End: Original strand, 23939755 - 23940060
Alignment:
| Q |
359 |
tagagagttccattggattctgtacgttaataatatctgaagtggtaccaacgacttagacttgtaagattctttaatttaaaagcattcataggtgctg |
458 |
Q |
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| T |
23939755 |
tagagagttccattggattctgtacgttaataatatctgaagtggtccaaacgacttagagttgtaagattctttaaattaaaagcattcataggtgctg |
23939854 |
T |
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| Q |
459 |
atatttatctcaactggatttgaaaatctcctttcttgatccaacctttaaacagatcgataataaacatgcatatgaatctctaaataaggatttattt |
558 |
Q |
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| T |
23939855 |
atgtttatctcaactgtatttgaaaatctcctttcttgatccaacctttaaacagatcgataataaacatgcatatgaatctctaaataaggatttattt |
23939954 |
T |
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| Q |
559 |
atgagagtagcaattggtatactacatatataattacccatgtaaaatcaaagatcaaatttaaggaaatgaataacaataaactcacctgcgcattcat |
658 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23939955 |
atgagagtagcaattggtatactacatatataattacccatgtaaaatcaaagatcaaatttaaggaaatgaataacaataaactcacctgcgtattcat |
23940054 |
T |
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| Q |
659 |
ctctct |
664 |
Q |
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||||| |
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| T |
23940055 |
ttctct |
23940060 |
T |
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