View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_high_4 (Length: 467)
Name: NF14891_high_4
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 81 - 452
Target Start/End: Original strand, 26152669 - 26153044
Alignment:
| Q |
81 |
atgaaagaaaaatgttgatttttgacac--gtcatcat--tacagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
176 |
Q |
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||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152669 |
atgaatgaaaaatgttgatttttgacatatgtcatcatgttatagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
26152768 |
T |
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| Q |
177 |
cgacgggaaaattgagggattattaggaattatcaacatctactctctcattggttcatgtcttgccgggagaacctccgattggattggtcgtcgttac |
276 |
Q |
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| T |
26152769 |
cgacgggaaaattgaggtcttattaggaattatcaacatctactctctcattggttcatgtcttgccgggagaacctccgattggattggtcgtcgttac |
26152868 |
T |
|
| Q |
277 |
accatcgtgtttgcgggggccattttcttcgtcggagccttactcatgggtttctcaccaaactataacttcctcatgtttggccgctttgtcgccggag |
376 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |
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| T |
26152869 |
accatcgtgtttgcaggggccattttctttgtcggagccttactcatgggtttctcaccaaactacaacttcctcatgtttggtcgttttgttgccggag |
26152968 |
T |
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| Q |
377 |
ttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggctttct |
452 |
Q |
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| T |
26152969 |
ttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggctttct |
26153044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 26152557 - 26152636
Alignment:
| Q |
2 |
aagtatgcttttgcttgtgctatattatctttttaacggtaaatattagtacgttaattgttatgttattattttcttta |
81 |
Q |
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|||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
26152557 |
aagtatgcttttgcttgtgctatattgttttattaatggtaaatattagtacgttaattgttacgttacttttttcttta |
26152636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 27318766 - 27318839
Alignment:
| Q |
118 |
acagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatccgacgggaaaattga |
191 |
Q |
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| T |
27318766 |
acagatattggtgtgatgagtggagcagccatctatataaaaagagaccttaaagtaacagacgtgcaaattga |
27318839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 24040396 - 24040356
Alignment:
| Q |
31 |
tttttaacggtaaatattagtacgttaattgttatgttatt |
71 |
Q |
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| T |
24040396 |
tttttaacggtaaatgttagtaagttaattgttacgttatt |
24040356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 449
Target Start/End: Original strand, 54348138 - 54348339
Alignment:
| Q |
248 |
gaacctccgattggattggtcgtcgttacaccatcgtgtttgcgggggccattttcttcgtcggagccttactcatgggtttctcaccaaactataactt |
347 |
Q |
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||||||| || ||||||||||| |||||||||||||| |||| || |||| ||||||| || || | |||||||| ||||| || |||| | ||| |
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| T |
54348138 |
gaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcctt |
54348237 |
T |
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| Q |
348 |
cctcatgtttggccgctttgtcgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggc |
447 |
Q |
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| T |
54348238 |
tctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcggc |
54348337 |
T |
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| Q |
448 |
tt |
449 |
Q |
| |
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|| |
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|
| T |
54348338 |
tt |
54348339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 54348009 - 54348066
Alignment:
| Q |
119 |
cagatattggtgttatgagtggagcagcaatctacataaaaagagaccttaaagtatc |
176 |
Q |
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|||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| |
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| T |
54348009 |
cagatattggggtgatgagtggagcagtgatatacataaaaagagacctcaaactatc |
54348066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 35478496 - 35478530
Alignment:
| Q |
42 |
aaatattagtacgttaattgttatgttattatttt |
76 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
35478496 |
aaatattaatacgttaattgttatgttattatttt |
35478530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 31496805 - 31496857
Alignment:
| Q |
26 |
ttatctttttaacggtaaatattagtacgttaattgttatgttattattttct |
78 |
Q |
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|||| |||||||||| ||||||||||| ||| ||||||||||| |||||||| |
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| T |
31496805 |
ttatttttttaacggaaaatattagtatgttggttgttatgttagtattttct |
31496857 |
T |
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