View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_low_1 (Length: 728)
Name: NF14891_low_1
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 372 - 724
Target Start/End: Original strand, 38343885 - 38344237
Alignment:
| Q |
372 |
ttcaccattcatccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtatcaactccct |
471 |
Q |
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| T |
38343885 |
ttcaccattcatccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtatcaactctat |
38343984 |
T |
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| Q |
472 |
catatcataaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatttgtgcaggtgaaaaggtagtggttttcttgcatgga |
571 |
Q |
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| T |
38343985 |
catatcataaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatctgtgcaggtgaaaaggtagtggttttcttgcatgga |
38344084 |
T |
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| Q |
572 |
ttcccagaaatatggtatacttggagataccaaatgattgctgttgcagatgctggataccgtgctattgcctttgattttagaggctatggactttcag |
671 |
Q |
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| T |
38344085 |
ttcccagaaatatggtatacttggagataccaaatgattgctgttgcaaatgctggataccgtgctattgcctttgattttagaggctatggactttcag |
38344184 |
T |
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| Q |
672 |
atcatccagcagagccggaaaaagcaactataatggaccttgttgatgatgtc |
724 |
Q |
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| T |
38344185 |
atcatccagcagagccggaaaaagcaactataatggaccttgttgatgatgtc |
38344237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 38343535 - 38343859
Alignment:
| Q |
20 |
gttaaccgagtgtcgcagatgtaaagaaaattggatgtccatttcatgaaacatttttgctcaacaattgccattggagaatccaaatcaattggtagtt |
119 |
Q |
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| T |
38343535 |
gttaaccgagtgtcgcagatgtaaagaaaattggatgttcatttcatgaaacatttttgctcaacaattgccattggagaatccaaatcaattggtagtt |
38343634 |
T |
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| Q |
120 |
tgcaatctaaccctatgactaatgctttttaacatagttcatgaaactatacttatccaactatgcctaatatttcaccattgaccgcccnnnnnnnact |
219 |
Q |
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| T |
38343635 |
tgcaatctaaccctatgactaatgctttttaacatagttcatgaaactatacttatccaactatgcctaatatttcaccattgacccccctttttttact |
38343734 |
T |
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| Q |
220 |
tgttacaaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcatttgtctgtttcctttgttttctt |
319 |
Q |
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| T |
38343735 |
tgttagaaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcatttgtctgtttcctttgttttctt |
38343834 |
T |
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| Q |
320 |
tcttcttttagtcatataactctat |
344 |
Q |
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| T |
38343835 |
tcttcttttagtcatataactctat |
38343859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 381 - 720
Target Start/End: Original strand, 38348984 - 38349320
Alignment:
| Q |
381 |
catccaagatggagaacatccagcacagtcatgtagaagtgaagggactaaagctccatgtagctgagatcggaactggtat--caactccctcatatca |
478 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||| |||||| |
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| T |
38348984 |
catcaaagatggataacatccaacacagtcatgtagaagtgaagggactgaagctccatgtagctgagattggaactggtataccaacacccttatatca |
38349083 |
T |
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| Q |
479 |
taaacttttcttggttgatttgtttctaaactctgaagtacaacaacattttttatttgtgcaggtgaaaaggtagtggttttcttgcatggattcccag |
578 |
Q |
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| T |
38349084 |
gaaaatattcatgattgattcgtttcgaaagtat----tataacaaaaaatttg-tttgtgtaggtgaaaaagcagtggttttcatacatggattcccag |
38349178 |
T |
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| Q |
579 |
aaatatggtatacttggagataccaaatgattgctgttgcagatgctggataccgtgctattgcctttgattttagaggctatggactttcagatcatcc |
678 |
Q |
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| T |
38349179 |
aaatatggtatacatggcgataccaaatgattgctgttgcaaatgctggataccgtgctatagcctttgattctagaggctatggactctctgatcatcc |
38349278 |
T |
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| Q |
679 |
agcagagccggaaaaagcaactataatggaccttgttgatga |
720 |
Q |
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|||||| || |||||| |||| |||||||||||||||||||| |
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| T |
38349279 |
agcagaaccagaaaaatcaaccataatggaccttgttgatga |
38349320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 38348836 - 38348913
Alignment:
| Q |
225 |
caaaacagcatccgaatattcattttaatctgtctgtatctacacatgtagtaaatgagttaggtgcttcatttgtct |
302 |
Q |
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| T |
38348836 |
caaaacagcatctaaatactaaatttaatctgtctgcatctgcacatgaaggaaatgagttaggtgcttcatttgtct |
38348913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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