View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_low_3 (Length: 471)
Name: NF14891_low_3
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 34098067 - 34097813
Alignment:
| Q |
11 |
gagagagaagaaaagaattgtgatgtagtcctatgtttgaactgtgagtaagaaaagagaacatagggagagatattagggtgcagttttacctaaagaa |
110 |
Q |
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| T |
34098067 |
gagagagaagaaaagaattgtgatgtagtcctatgtttgaactgtgagtaagaaaagagaacatagggagagatattagggtgcagttttacctaaagaa |
34097968 |
T |
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| Q |
111 |
gagagattacagaaaagttaaaaggtaaaaaggtggtcataataagtagaacaaagagatatagcatgtttgccacaggcagccactctgccatacaact |
210 |
Q |
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| T |
34097967 |
gagagattacagaaaagttaaaaggtaaaaaggtggtcataataagtagaacaaagagatatagcatgtttgccacaggcagccactctgccatacaact |
34097868 |
T |
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| Q |
211 |
cttactacatggaaaaagaaacactttttaactccttatattaacatgcatcttg |
265 |
Q |
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| T |
34097867 |
cttactacatggaaaaagaaacactttttaactccttatattaacatgcatcttg |
34097813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 298 - 454
Target Start/End: Complemental strand, 34097780 - 34097624
Alignment:
| Q |
298 |
ccctatgcttttatacccttattaggtacaagatgcaaatgccaatgttaatagggtcttctagcattggcatctattttgatgaatannnnnnnnnnnn |
397 |
Q |
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| T |
34097780 |
ccctatgcttttatacccttattaggtacaagatgcaaatgccaatgttaatagggtcttctagcattggcatctattttgatgaatattttttttcacg |
34097681 |
T |
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| Q |
398 |
nnnnnnggagcattctctataggcattacttgactcccataaacggcatgacagagt |
454 |
Q |
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| T |
34097680 |
ttttttggagcattctctataggcattacttgactcccataaacggcatgacagagt |
34097624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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