View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_low_5 (Length: 377)
Name: NF14891_low_5
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 41727733 - 41727360
Alignment:
| Q |
1 |
taccccatttttctccatcgtgtctccatgtgtttatttcttttctgtattggatattatgatttagttatgcttggctttgaagtgattttcatgaact |
100 |
Q |
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| T |
41727733 |
taccccatttttctccatcgtgtatccatgtgtttatttcttttctgtattggatattatgatttagttatgcttggctttgaagtgattttcatgaact |
41727634 |
T |
|
| Q |
101 |
tccttttatgttatctgcgtttgtgtaagtcttaactttgtattgaagtgtctaaatatctaataattctttcagtcattttgaaacttgtttgagtatg |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41727633 |
tccttttatagtatctgcgtttgtgtaagtcttaactttgtattgaagtgtctaaatatctaataattctttcagtcattttgaaacttgtttgagtatg |
41727534 |
T |
|
| Q |
201 |
tcacaaagtaaagagaaggacaactgcacatgttaattcacaccttctctaccatagcatcttcttacctttactagttagtatagtgcttataaccttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41727533 |
tcacaaagtaaagagaaggacaactgcacatgttaattcacaccttctctaccatagcatcttcttacctttactagttagtatagtgcttataaccttc |
41727434 |
T |
|
| Q |
301 |
cttttaagtttccaatcatgaatatattaatctgctacagttggatgtaagcaattttcttcgtttgtcctttg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41727433 |
cttttaagtttccaatcatgaatatattaatctgctacagttggatgtaagcaattttcttcttttgtcctttg |
41727360 |
T |
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