View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14891_low_7 (Length: 340)
Name: NF14891_low_7
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14891_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 41719291 - 41719613
Alignment:
| Q |
15 |
acaatgaccagaaatcaagcttcggcaaataacaacaatcaacatgctttgtttaactatcactcgcaaggatnnnnnnncaagatctatgccaacatat |
114 |
Q |
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| T |
41719291 |
acaatgaccagaaatcaagctttggcaaataacaacaatcaacatgctttgtttaactatcactcgcaaggataaaaaaacaagatctatgccaacatat |
41719390 |
T |
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| Q |
115 |
tcattatccgaaattataaattgagattgtgatcggaatcgatcaccagaattcaatttcaaccaattccacaaacaaatgtcaaagtaataaaaaacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41719391 |
tcattatccgaaattataaattgagattgtgatcggaatcgatcaccagaattcaatttcaaccaattccacaaacaaatgtcaaagtaataaaaaacaa |
41719490 |
T |
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| Q |
215 |
ttgaaagttcaaattatcagtgaacaaaacagtgtnnnnnnngttcgagaaaattacattttctttcgaatttcaacttggcgctcttttcgctcatatt |
314 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41719491 |
ttgaaagttcaaattatcagtgaacaaaacagcgtaaaaaaagttcgagaaaattacattttctttcgaatttcaacttggcgctcttttcgctcatatt |
41719590 |
T |
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| Q |
315 |
cttgtctaatcttcttcttctca |
337 |
Q |
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||||||| ||||||||||||||| |
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| T |
41719591 |
cttgtctgatcttcttcttctca |
41719613 |
T |
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