View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14891_low_8 (Length: 314)

Name: NF14891_low_8
Description: NF14891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14891_low_8
NF14891_low_8
[»] chr1 (1 HSPs)
chr1 (3-299)||(36275429-36275705)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 36275705 - 36275429
Alignment:
Q  3 aaaagagtgatgttgattatataaacatagtaacttacttcagtgacatctttagcaatggttgacttgtcttcccccatagtatttagcaattttctac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36275705 aaaagagtgatgttgattatataaacatagtaacttacttcagtgacatctttagcaatggttgacttgtcttcccccatagtatttagcaattttctac 36275606  T
Q  103 aaaaacagaaacataaacagataagattcctagataagaaattaaattgaagaggatgaaaaagatttcatgtaaatatggtaataaatggcgtaccagt 202  Q
    |||| |||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36275605 aaaagcagaaacataaacagataagatt--------------------gaagaggatgaaaaagatttcatgtaaatatggtaataaatggcgtaccagt 36275526  T
Q  203 tcagtgtgataggtagtttgagacagagacaaaggtgttgtactttgtacgtgtaaaaaaggaaggagaatggtaactacatggaaaaggaaaaaac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36275525 tcagtgtgataggtagtttgagacagagacaaaggtgttgtactttgtacgtgtaaaaaaggaaggagaatggtaactacatggaaaaagaaaaaac 36275429  T

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