View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_high_13 (Length: 335)
Name: NF14892_high_13
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 30008363 - 30008064
Alignment:
| Q |
12 |
aactccatcttatttgtcgttctacaatctccatagagtaacattctagttttgttgtcatgtttgatatgttgtgttaaaaaagctttagaatttcaag |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
30008363 |
aacttcatcttatttgtcgttctacaatctccatag--taacattctagttttgttgtcatgtgtgatatgttgtgttaaaaaagctttagaatttgaag |
30008266 |
T |
|
| Q |
112 |
gtctacctcatttctagaattgatattagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctacctttta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
30008265 |
gtctacctcatttctagaattgatattagcatgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttg |
30008166 |
T |
|
| Q |
212 |
aagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaacacaccata--tctcataccaattttaaattc |
309 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
30008165 |
aagcttctttaaatcacgttaaaaattacctcgggacgtggaaaaggtgttttggccgtgaatccaaacacaccatatgtcccataccaattttaaattc |
30008066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 29966435 - 29966651
Alignment:
| Q |
12 |
aactccatcttatttgtcgttctacaatctccatagagtaacattctagttttgttgtcatgtttgatatgttgtgttaaaaaagctttagaatttcaag |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
29966435 |
aacttcatcttatttgtcgttctacaatctccatag--taacattctagttttgttgtcatgtgtgatatgttgtgttaaaaaagctttagaatttgaag |
29966532 |
T |
|
| Q |
112 |
gtctacctcatttctagaattgatattagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctacctttta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
29966533 |
gtctacctcatttctagaattgatattagcatgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttg |
29966632 |
T |
|
| Q |
212 |
aagcttctttaaatcacgt |
230 |
Q |
| |
|
||||||||||||||||||| |
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| T |
29966633 |
aagcttctttaaatcacgt |
29966651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 15362601 - 15362751
Alignment:
| Q |
138 |
tagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaat |
237 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15362601 |
tagcatttttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaat |
15362700 |
T |
|
| Q |
238 |
tgcctcgggacatggaaaaagtgttttggccgtgaatccaaacacaccata |
288 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15362701 |
tgcctcgggacgtggaaaaggtgttttggccgtgaatccaaacacaccata |
15362751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 138 - 288
Target Start/End: Complemental strand, 34573271 - 34573121
Alignment:
| Q |
138 |
tagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
34573271 |
tagcatgtttgtgcaagcggttgatttattaattcagcggcaaaaacccacgtttgaggagaagctatcttttgaagcttctttaaatcacgttaaaaat |
34573172 |
T |
|
| Q |
238 |
tgcctcgggacatggaaaaagtgttttggccgtgaatccaaacacaccata |
288 |
Q |
| |
|
|| |||||||| ||||||| |||||||||| || || ||||||||| |||| |
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|
| T |
34573171 |
tgtctcgggacgtggaaaaggtgttttggctgtaaaaccaaacacatcata |
34573121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 36059528 - 36059391
Alignment:
| Q |
146 |
ttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgg |
245 |
Q |
| |
|
|||||||||||| |||||||||| || ||| ||||||| ||||||| ||||| |||||||||||| ||||||||||||||| | | | || |||||||| |
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| T |
36059528 |
ttgtgcaagcggatgatttatcacttgagcagcaaaaagccacgttggaggaaaagctaccttttggagcttctttaaatcatggtgagaaatgcctcgg |
36059429 |
T |
|
| Q |
246 |
gacatggaaaaagtgttttggccgtgaatccaaacaca |
283 |
Q |
| |
|
||| || |||| ||||| | |||||||||||||||| |
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| T |
36059428 |
gacgtgcaaaaggtgttcatgtcgtgaatccaaacaca |
36059391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 30002631 - 30002570
Alignment:
| Q |
65 |
gttgtcatgtttgatatgttgtgttaaaaaagctttagaatttcaaggtctacctcatttcta |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||| |
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|
| T |
30002631 |
gttgtcatgtgtgatatgttgtgttaaaaaaactttagaacttc-aggtctacctcatttcta |
30002570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 138 - 283
Target Start/End: Complemental strand, 4051632 - 4051487
Alignment:
| Q |
138 |
tagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4051632 |
tagcatgtttgtgcaagcggttgatttatcaattcagctgcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaat |
4051533 |
T |
|
| Q |
238 |
tgcctcgggacatggaaaaagtgttttggccgtgaatccaaacaca |
283 |
Q |
| |
|
| |||||||| || |||| |||||||||||||||||||||||||| |
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|
| T |
4051532 |
tatctcgggacgtgaaaaaggtgttttggccgtgaatccaaacaca |
4051487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 50502033 - 50501892
Alignment:
| Q |
142 |
atgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcc |
241 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||| | |
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|
| T |
50502033 |
atgtttgtgcaagcggttgatttattaattcagcagtaaaaacccacgtttgaggaaaaactaccttttgaagcttctttaaattacgttaaaaattgtc |
50501934 |
T |
|
| Q |
242 |
tcgggacatggaaaaagtgttttggccgtgaatccaaacaca |
283 |
Q |
| |
|
||||||| || |||| ||||||| |||| |||||||||||| |
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|
| T |
50501933 |
tcgggacgtgaaaaagatgttttgaccgtaaatccaaacaca |
50501892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 2138523 - 2138421
Alignment:
| Q |
138 |
tagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaat |
237 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
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|
| T |
2138523 |
tagcatgtttgtgtaagcggtttatttatcaattcagcggcaaaaactcacgtttgaggagaagctatcttttgaaacttctttaaatcacgttaaaaat |
2138424 |
T |
|
| Q |
238 |
tgc |
240 |
Q |
| |
|
||| |
|
|
| T |
2138423 |
tgc |
2138421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 35239556 - 35239648
Alignment:
| Q |
137 |
ttagcatgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacg |
229 |
Q |
| |
|
||||||||||||| |||||||| || |||||| || |||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35239556 |
ttagcatgtttgttcaagcggtggaattatcactttagcggccaaaacctgcgttggaggagaagttaccttttaaagcttctttaaatcacg |
35239648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 3822760 - 3822847
Alignment:
| Q |
142 |
atgtttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacg |
229 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||| || ||||| || || ||||||||||| |
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|
| T |
3822760 |
atgtttgtgcaagcggttaatttatcacttcagcggcaaaaacccacgtttgagtaaaagttagcttttcaaatttttttaaatcacg |
3822847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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