View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14892_high_14 (Length: 332)

Name: NF14892_high_14
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14892_high_14
NF14892_high_14
[»] chr6 (8 HSPs)
chr6 (179-318)||(8716685-8716824)
chr6 (179-318)||(5850435-5850574)
chr6 (188-315)||(5751247-5751373)
chr6 (65-110)||(5850948-5850993)
chr6 (121-172)||(5850633-5850684)
chr6 (18-58)||(5851116-5851156)
chr6 (121-158)||(8716592-8716629)
chr6 (250-315)||(8716645-8716710)
[»] scaffold0087 (7 HSPs)
scaffold0087 (179-302)||(10305-10428)
scaffold0087 (60-105)||(3313-3358)
scaffold0087 (60-110)||(28143-28193)
scaffold0087 (60-94)||(10800-10834)
scaffold0087 (250-315)||(10403-10468)
scaffold0087 (18-46)||(10954-10982)
scaffold0087 (18-58)||(28312-28352)
[»] scaffold0127 (2 HSPs)
scaffold0127 (182-245)||(18454-18517)
scaffold0127 (235-315)||(18396-18476)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 318
Target Start/End: Original strand, 8716685 - 8716824
Alignment:
Q  179 gagtgtgtaacatacttccatttctcctagatagcaaaatcaaatatatattgaataagacttttgtggcgggaaagacttttattttcatagaaatttt 278  Q
    |||||||||||||||||||||||||||| || |||||||||||| || ||||||| |||||||||| | |||| ||||||||||||||||||||| ||||    
T  8716685 gagtgtgtaacatacttccatttctccttgacagcaaaatcaaacatttattgaacaagacttttgcgacgggcaagacttttattttcatagaagtttt 8716784  T
Q  279 gaattattatagggtgtgttacacacttccatttctcata 318  Q
    |||||| |||||| |||||||||  |||||||||||||||    
T  8716785 gaattactataggatgtgttacatgcttccatttctcata 8716824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 318
Target Start/End: Complemental strand, 5850574 - 5850435
Alignment:
Q  179 gagtgtgtaacatacttccatttctcctagatagcaaaatcaaatatatattgaataagacttttgtggcgggaaagacttttattttcatagaaatttt 278  Q
    ||||||||||| |||||||||||||||| || |||||||||||| || ||| ||| ||||||||||   |||| |||||||| |||||||||||| ||||    
T  5850574 gagtgtgtaacgtacttccatttctccttgacagcaaaatcaaacatttatagaacaagacttttgcaacgggcaagactttaattttcatagaagtttt 5850475  T
Q  279 gaattattatagggtgtgttacacacttccatttctcata 318  Q
    ||||||||||||| |||||||||  |||||||||||||||    
T  5850474 gaattattataggatgtgttacatgcttccatttctcata 5850435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 5751373 - 5751247
Alignment:
Q  188 acatacttccatttctcctagatagcaaaatcaaatatatattgaataagacttttgtggcgggaaagacttttattttcatagaaattttgaattatta 287  Q
    ||||||||| |||||||||||| ||  ||||||   || ||||||| || |||||||||  | ||||||||||||||| | || || |||||||||||||    
T  5751373 acatacttcaatttctcctagacaggtaaatcacccatttattgaacaatacttttgtgatgagaaagacttttatttac-tataagttttgaattatta 5751275  T
Q  288 tagggtgtgttacacacttccatttctc 315  Q
    |||  ||||||||| |||||||||||||    
T  5751274 tagaatgtgttacatacttccatttctc 5751247  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 5850993 - 5850948
Alignment:
Q  65 gaaagtagaaacaaaattatcaataatagatgtgtacgaaaggatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5850993 gaaagtagaaacaaaattatcaataatagatgtgtacgaaaagatt 5850948  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 5850684 - 5850633
Alignment:
Q  121 attagttttaaattattatagagtgtgttacatgcttcagtgtgttacatgc 172  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  5850684 attagttttgaataattatagagtgtgttacatgcttgagtgtgttacatgc 5850633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 5851156 - 5851116
Alignment:
Q  18 gtttaatgacaaataaagcaaattatagctaacatagtaac 58  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  5851156 gtttaatgacaaataaagcaaattatagcaaagatagtaac 5851116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 8716592 - 8716629
Alignment:
Q  121 attagttttaaattattatagagtgtgttacatgcttc 158  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  8716592 attagttttgaataattatagagtgtgttacatgcttc 8716629  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 8716645 - 8716710
Alignment:
Q  250 ggaaagacttttattttcatagaaattttgaattattatagggtgtgttacacacttccatttctc 315  Q
    |||||||||||| ||||  ||||| |||||| |||||| || |||||| ||| |||||||||||||    
T  8716645 ggaaagacttttgtttttttagaagttttgatttattacagagtgtgtaacatacttccatttctc 8716710  T

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Target: scaffold0087 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 10428 - 10305
Alignment:
Q  179 gagtgtgtaacatacttccatttctcctagatagcaaaatcaaatatatattgaataagacttttgtggcgggaaagacttttattttcatagaaatttt 278  Q
    |||||||||||||||||||||||||||| || ||| |||||||| || ||||||| ||||||||||   |||| ||||||||||||||||||||| ||||    
T  10428 gagtgtgtaacatacttccatttctcctggacagctaaatcaaacatttattgaacaagacttttgcaacgggcaagacttttattttcatagaagtttt 10329  T
Q  279 gaattattatagggtgtgttacac 302  Q
    ||||||||||||| ||||||||||    
T  10328 gaattattataggatgtgttacac 10305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 3358 - 3313
Alignment:
Q  60 accaggaaagtagaaacaaaattatcaataatagatgtgtacgaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3358 accaggaaagtagaaacaaaattatcaataatagatgtgtacgaaa 3313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 28193 - 28143
Alignment:
Q  60 accaggaaagtagaaacaaaattatcaataatagatgtgtacgaaaggatt 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  28193 accaggaaagtagaaacaaaattatcaataatagatgtggacgaaaagatt 28143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 10834 - 10800
Alignment:
Q  60 accaggaaagtagaaacaaaattatcaataataga 94  Q
    |||||||| ||||||||||||||||||||||||||    
T  10834 accaggaatgtagaaacaaaattatcaataataga 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 10468 - 10403
Alignment:
Q  250 ggaaagacttttattttcatagaaattttgaattattatagggtgtgttacacacttccatttctc 315  Q
    |||||||||||| ||||  ||||| |||||| |||||| || |||||| ||| |||||||||||||    
T  10468 ggaaagacttttgtttttgtagaagttttgatttattacagagtgtgtaacatacttccatttctc 10403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 10982 - 10954
Alignment:
Q  18 gtttaatgacaaataaagcaaattatagc 46  Q
    |||||||||||||||||||||||||||||    
T  10982 gtttaatgacaaataaagcaaattatagc 10954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 28352 - 28312
Alignment:
Q  18 gtttaatgacaaataaagcaaattatagctaacatagtaac 58  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  28352 gtttaatgacaaataaagcaaattattgcaaagatagtaac 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 18454 - 18517
Alignment:
Q  182 tgtgtaacatacttccatttctcctagatagcaaaatcaaatatatattgaataagacttttgt 245  Q
    ||||| |||||||||||||||||||||| ||||||||||   || |||| || |||||||||||    
T  18454 tgtgttacatacttccatttctcctagacagcaaaatcacccatttattaaacaagacttttgt 18517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 18396 - 18476
Alignment:
Q  235 aagacttttgtggcgggaaagacttttattttcatagaaattttgaattattatagggtgtgttacacacttccatttctc 315  Q
    ||||||||||||  ||| |||| |||| ||||| || || ||||||| |||| |||  ||||||||| |||||||||||||    
T  18396 aagacttttgtgatgggcaagatttttgttttcctataagttttgaactattgtagactgtgttacatacttccatttctc 18476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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