View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_high_19 (Length: 242)
Name: NF14892_high_19
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28946358 - 28946580
Alignment:
| Q |
1 |
tgtcatcctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946358 |
tgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
28946457 |
T |
|
| Q |
101 |
ttcgaattcctcgtggccctcgcattcttcggttctacagcatccaaattcacattagtagaatcagtaacaattttcctgctccgcgtattcctcgtaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946458 |
ttcgaattcctcgtggccctagcattcttcggttctacaggatccaaattcacattagtagaatcagtaacaattttcctgctccgcgtattcctcgtaa |
28946557 |
T |
|
| Q |
201 |
ccttcgttggttcaggtcgatcc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
28946558 |
ccttcgttggttcaggtcgatcc |
28946580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28946247 - 28946376
Alignment:
| Q |
1 |
tgtcatcctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
100 |
Q |
| |
|
||||| ||||||||| ||||| ||||| || || |||||||||||| | ||||||| |||||||| ||||||||||| | | | |||||||||||||| |
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| T |
28946247 |
tgtcaccctcacatttttctttacttcctccaccttctccttcacaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattc |
28946346 |
T |
|
| Q |
101 |
ttcgaattcctcgtggccctcgcattcttc |
130 |
Q |
| |
|
||||||||||| || ||||| |||||||| |
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| T |
28946347 |
ttcgaattccttgtcaccctcacattcttc |
28946376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34823721 - 34823943
Alignment:
| Q |
1 |
tgtcatcctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823721 |
tgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
34823820 |
T |
|
| Q |
101 |
ttcgaattcctcgtggccctcgcattcttcggttctacagcatccaaattcacattagtagaatcagtaacaattttcctgctccgcgtattcctcgtaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34823821 |
ttcgaattcctcgtggcccttgcattcttcggttctacagtatccaaattcacattagtagaatcagtaacaattttcctgctccgcttattcctcgtaa |
34823920 |
T |
|
| Q |
201 |
ccttcgttggttcaggtcgatcc |
223 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
34823921 |
ccttctttggttcaggtcgatcc |
34823943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34823610 - 34823739
Alignment:
| Q |
1 |
tgtcatcctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
100 |
Q |
| |
|
||||| ||||||||| ||||| ||||| || || |||||||| ||| | ||||||| |||||||| ||||||||||| | | | |||||||||||||| |
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|
| T |
34823610 |
tgtcaccctcacatttttctttacttcctccaccttctcctttacaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattc |
34823709 |
T |
|
| Q |
101 |
ttcgaattcctcgtggccctcgcattcttc |
130 |
Q |
| |
|
||||||||||| || ||||| |||||||| |
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|
| T |
34823710 |
ttcgaattccttgtcaccctcacattcttc |
34823739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 42232254 - 42232099
Alignment:
| Q |
70 |
atcacaaatctcaacagcattcttcttattcttcgaattcctcgtggccctcgcattcttcggttctacagca---tccaaattcacattagtagaatca |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| | |||||||||| ||||||| ||||| |||||||||| |
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|
| T |
42232254 |
atcacaaatctcaactgcattcttcttattcttcgaattcctcgacaccctcacattcttagattctacagcagcatccaaatacacatgagtagaatca |
42232155 |
T |
|
| Q |
167 |
gtaacaattttcctgctccgcgtattcctcgtaaccttcgttggttcaggtcgatc |
222 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| | |||| ||||||||| |
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|
| T |
42232154 |
gaaacaacgttcctgctccgcgtattcctcgtaaccttcatcggttgaggtcgatc |
42232099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 42232416 - 42232287
Alignment:
| Q |
1 |
tgtcatcctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctcaacagcattcttcttattc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| || || ||||| || ||| | ||||||| |||||||| |||||||||| |||||| | ||||||||| ||| |
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|
| T |
42232416 |
tgtcaccctcacattcttcttcacttcctccaccttctctttgacaccctccaaatccccattactcgaatcacaaacctcaactgtattcttcttgttc |
42232317 |
T |
|
| Q |
101 |
ttcgaattcctcgtggccctcgcattcttc |
130 |
Q |
| |
|
||||||||||| || ||||| |||||||| |
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|
| T |
42232316 |
ttcgaattccttgtcaccctcacattcttc |
42232287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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