View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14892_high_2 (Length: 551)
Name: NF14892_high_2
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 274 - 541
Target Start/End: Complemental strand, 30362716 - 30362449
Alignment:
| Q |
274 |
tagttcacatattcatgttcattcgtagatatactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattgttg |
373 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30362716 |
tagttcacatattcatgttcattcatagatttactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattcttg |
30362617 |
T |
|
| Q |
374 |
tacttttccttgatgtagaccaacagtttcttaaatccaattggataactataaaaccaatctgaagcagcctgcagatatatataatcatggaggtttt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30362616 |
tacttttccttgatgtagaccaacagtttcttaaatccaattggataactgtaaaaccaatctgaagcagcctgcagatatatataatcatggaggtttc |
30362517 |
T |
|
| Q |
474 |
atatttttattttaccagaaagataaacttcatttgatttggtcacacttgtacgtacctgtggacct |
541 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30362516 |
atatttttattttagcagaaagataaacttcatttgatttggtcgcacttgtacgtacctgtggacct |
30362449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 30363004 - 30362809
Alignment:
| Q |
51 |
tagaaagtattaagatgtgtattgaagcaaatagacagaatttttagatataaaaacaaccattacctaattgctgattgaagatatgagagatggccct |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30363004 |
tagaaagtattaagatgtgtattgaagcaaatagacagaatttttagatataaaaacaaccattacctaattgctgattgaagatatgagagatggtcct |
30362905 |
T |
|
| Q |
151 |
gataataatgaattctgtcaatgtccttaagcgcttcctccaatggcagtgttggattatttttctcatctatacctgcaaatcaagtcaagtatg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30362904 |
gataataatgaattctgtcaatgtccttaagcgcttcctccaatggcagtgttggatcatttttctcatctatacctgcaaatcaagccaagtatg |
30362809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 29400543 - 29400662
Alignment:
| Q |
423 |
tataaaaccaatctgaagcagcctgcagatatatataatcatggaggttttatatttttattttaccagaaagat-aaacttcatttgatttggtcacac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
29400543 |
tataaaaccaatctgaagcagcctgcagatatatataaccatggaggtttcatatttttattttaccagaatgataaaacttcatttgatttggtcacac |
29400642 |
T |
|
| Q |
522 |
ttgtacgtacctgtggacct |
541 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29400643 |
ttgtacgtacctgtggacct |
29400662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 29400436 - 29400535
Alignment:
| Q |
293 |
cattcgtagatatactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggattgttgtacttttccttgatgtaga |
392 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29400436 |
cattcatagatttactttgcaatatttatcgaggattgttgtaatttaccattttcggtaacataaatcaatggactgttgtacttttccttaatgtaga |
29400535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 29400147 - 29400175
Alignment:
| Q |
51 |
tagaaagtattaagatgtgtattgaagca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29400147 |
tagaaagtattaagatgtgtattgaagca |
29400175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 29400187 - 29400235
Alignment:
| Q |
133 |
gatatgagagatggccctgataataatgaattctgtcaatgtccttaag |
181 |
Q |
| |
|
|||| ||||||||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
29400187 |
gatacgagagatggtcatgataataattaattctgtcaatgtcgttaag |
29400235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University