View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_high_23 (Length: 216)
Name: NF14892_high_23
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 28945976 - 28946168
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28945976 |
catcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
28946075 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccac |
203 |
Q |
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| T |
28946076 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccac |
28946168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 34823339 - 34823531
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823339 |
catcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
34823438 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccac |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823439 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccac |
34823531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 42232675 - 42232487
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
42232675 |
catcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttccccttagcaccacccctcgttttcttattctcaacatt |
42232576 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcct |
199 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
42232575 |
ctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtcatcctcacattcctcggctcct |
42232487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 42232933 - 42232890
Alignment:
| Q |
14 |
catcacaattctctttaccacctccatcaccaacaatctcttcc |
57 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
42232933 |
catcacaattctctttaccatctccatcaccaacacactcttcc |
42232890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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