View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_high_4 (Length: 518)
Name: NF14892_high_4
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 191 - 491
Target Start/End: Original strand, 37760733 - 37761035
Alignment:
| Q |
191 |
acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagcnnnnnnnacgctgttttttcatcatagatactctcttttata |
290 |
Q |
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| T |
37760733 |
acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagctttctttacgctgttttttcatcatagatactctcttttata |
37760832 |
T |
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| Q |
291 |
ttaacaatggcatttttccgttgcaactacaagaaacataaatggtacacacattctcgtttctttctttgagagattcttctcctccattctttttgga |
390 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37760833 |
ttaacaatggtatttttccgttgcaactacaagaaacaaaaatggtacacacattctcgtttctttctttgagagattcttctcctccattctttttgga |
37760932 |
T |
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| Q |
391 |
aaattagattttctagatgcattgcttttttaccatggt-aaaaatattgtttttcaccatagtg-aaaacataattattttccagtatgaataggcaaa |
488 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||| |||||||||||| |
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| T |
37760933 |
aaattagattttctagatacattgcttttttaccatggtaaaaaatattgtttttcaccatagtgaaaaatagaattattttccagtctgaataggcaaa |
37761032 |
T |
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| Q |
489 |
tcc |
491 |
Q |
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||| |
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| T |
37761033 |
tcc |
37761035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 37760577 - 37760659
Alignment:
| Q |
39 |
catcacaatgtaaaaacgagcacaccagaaacc-catgacgtggtaggatgcgaatatgcagaaacaaaattctcgattatac |
120 |
Q |
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||||| ||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
37760577 |
catcagaatgtaaaaacgagcacaccagaaaacgcatgacgtggtagaatgcgattatgcagaaacaaaattctcgattatac |
37760659 |
T |
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