View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_11 (Length: 372)
Name: NF14892_low_11
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_11 |
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| [»] scaffold0007 (3 HSPs) |
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| [»] scaffold0573 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 31692 - 31350
Alignment:
| Q |
17 |
atatagaccttatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31692 |
atatagaccttatcatcagagtcaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
31593 |
T |
|
| Q |
117 |
gttgtatcactattgagacggctcgaacaatcttattaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
216 |
Q |
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||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31592 |
gttgtatcactgttgagacgactcgaacaatcttatcaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
31493 |
T |
|
| Q |
217 |
ttttgaaaggaatttttaacacttttttattactgaaatacc-----atttggacacaaattcggattcaaagcactcatgcacttagatgatatgttcg |
311 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31492 |
ttttgagaggattttttaacacttttttattactgaaataccatttaatttggacacaaattcggattcagagcactcatgcacttagatgatatgttcg |
31393 |
T |
|
| Q |
312 |
caccagatcaagatcatacagttctaaaaaatagcatgtttat |
354 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31392 |
caccagatcaagatcatacggttctaaaaaatagcatgtttat |
31350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 36441 - 36099
Alignment:
| Q |
17 |
atatagaccttatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36441 |
atatagaccttatcatcagagtcaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
36342 |
T |
|
| Q |
117 |
gttgtatcactattgagacggctcgaacaatcttattaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
216 |
Q |
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||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36341 |
gttgtatcactgttgagacgactcgaacaatcttatcaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
36242 |
T |
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| Q |
217 |
ttttgaaaggaatttttaacacttttttattactgaaatacc-----atttggacacaaattcggattcaaagcactcatgcacttagatgatatgttcg |
311 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36241 |
ttttgagaggattttttaacacttttttattactgaaataccatttaatttggacacaaattcggattcagagcactcatgcacttagatgatatgttcg |
36142 |
T |
|
| Q |
312 |
caccagatcaagatcatacagttctaaaaaatagcatgtttat |
354 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36141 |
caccagatcaagatcatacggttctaaaaaatagcatgtttat |
36099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 67039 - 66702
Alignment:
| Q |
17 |
atatagaccttatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
116 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67039 |
atatagaccttatcatcagagtcaatattcaaaagcgataatacatcttgtttttgatcctccaacccaactaggtaatcaggtatagataaagaaaaag |
66940 |
T |
|
| Q |
117 |
gttgtatcactattgagacggctcgaacaatcttattaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
216 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66939 |
attgtatcactgttgagacgactcgaacaatcttattaataaacatgtattcatatccatccctgtccaatattacaaatgaagtcatcctagtggacct |
66840 |
T |
|
| Q |
217 |
ttttgaaaggaatttttaacacttttttattactgaaataccatttggacacaaattcggattcaaagcactcatgcacttagatgatatgttcgcacca |
316 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| | |
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| T |
66839 |
tttttagaggaatttttaacacttttttattactgaaataccatttggacacaaatttggattcagagtactcatgcacttagatgatatgttcgcacta |
66740 |
T |
|
| Q |
317 |
gatcaagatcatacagttctaaaaaatagcatgtttat |
354 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
66739 |
gatcaagatcatacggttctaaaaaatagcatgtttat |
66702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 8463 - 8622
Alignment:
| Q |
17 |
atatagaccttatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
116 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
8463 |
atatagactttatcaacagacccaacattcaaaagccgtaatacatcttgtatttggtcctccaacccaactatgtaatcaggaatagataaggaaaaag |
8562 |
T |
|
| Q |
117 |
gttgtatcactattgagacggctcgaacaatcttattaataaacatgtattcatatccat |
176 |
Q |
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|||| |||||| |||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
8563 |
gttggatcactcttgagacgtctctaacaatcttattaataaacatgtattcagatccat |
8622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 28901331 - 28901172
Alignment:
| Q |
17 |
atatagaccttatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatcaggtatagataaagaaaaag |
116 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
28901331 |
atatagactttatcaacagacccaacattcaaaagccgtaatacatcttgtatttggtcctccaacccaactatgtaatcaggaatagataaggaaaaag |
28901232 |
T |
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| Q |
117 |
gttgtatcactattgagacggctcgaacaatcttattaataaacatgtattcatatccat |
176 |
Q |
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|||| |||||| |||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
28901231 |
gttggatcactcttgagacgtctctaacaatcttattaataaacatgtattcagatccat |
28901172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 12589391 - 12589321
Alignment:
| Q |
27 |
tatcatcagagccaacattcaaaagcgataatacatcttgtttttggtcctccaacccaactaggtaatca |
97 |
Q |
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|||||||||| ||||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||| |
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| T |
12589391 |
tatcatcagacccaacattcaaaagcgaagtcacatgttgcttttggtgctccagtccaactaggtaatca |
12589321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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