View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_12 (Length: 341)
Name: NF14892_low_12
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 2289495 - 2289820
Alignment:
| Q |
4 |
aagtctcagacaaacatcatcatagcaacccaagtagcttatattatatgaatcaaatccatatatttttt--actcatttatctccccgtaaaagtatt |
101 |
Q |
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| T |
2289495 |
aagtctcagacaaacatcatcatagcaacccaagtagcttatattatatgaataaaatccatatattttttttactcatttatctccccgtaaaagtatt |
2289594 |
T |
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| Q |
102 |
gtttataaaattcttttattaacataaaaatcgacnnnnnnnnnnnnn---cattaattcttttaaaaaagttatcttttttcatcaaaggtgcattcgt |
198 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2289595 |
gtttataaaattcttttattaacataaaaatcgacttttattattttttttcattaattcttttaaaaaagttat-ttttttcatcaaaggtgcattcgt |
2289693 |
T |
|
| Q |
199 |
aatcgaggattaaaggattcaagaatcaacgaggtttggttagtagtatctccactttaagaaaatcataatttgaatccctagtgaatgcaatatatgt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289694 |
aatcgaggattaaaggattcaagaatcaacgaggtttggttagtagtatctccactttaagaaaatcataatttgaatccctagtgaatgcaatatatgt |
2289793 |
T |
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| Q |
299 |
gtgtggcaaatgcttatgcaaataaat |
325 |
Q |
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|||||||||||||| ||||||||| |
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| T |
2289794 |
acatggcaaatgcttatacaaataaat |
2289820 |
T |
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