View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_22 (Length: 241)
Name: NF14892_low_22
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 56045301 - 56045506
Alignment:
| Q |
16 |
aatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccac |
115 |
Q |
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| T |
56045301 |
aatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccac |
56045400 |
T |
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| Q |
116 |
ttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttga |
215 |
Q |
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| T |
56045401 |
ttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttga |
56045500 |
T |
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| Q |
216 |
tgctag |
221 |
Q |
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|||||| |
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| T |
56045501 |
tgctag |
56045506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 55706814 - 55706967
Alignment:
| Q |
70 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
169 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
170 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctag |
221 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctag |
55706967 |
T |
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