View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_23 (Length: 241)
Name: NF14892_low_23
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 28817243 - 28817023
Alignment:
| Q |
19 |
aggattgctatcaggccactcgagtcacactcttatggactcttatcttcagagtttcttaataggcatggccttcatcttctaggaacaactagtacat |
118 |
Q |
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| T |
28817243 |
aggattgctatcaggccactcgagtcacactcttatggactcttctcttcagagtttcttaataggcatggccttcatcttctaggaacaactagtacat |
28817144 |
T |
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| Q |
119 |
ggtttttattggacattgctttctatagtcttcaactgacacaaaaagatatttatccagctagtggacttgtatacaaggcttccaaaatgaatgccat |
218 |
Q |
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| T |
28817143 |
ggtttttattggacattgctttctatagtcttcaactgacacaaaaagatatttatccaactagtggacttgtatacaaggcttccaaaatgaatgccat |
28817044 |
T |
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| Q |
219 |
agaggaagtgtttcatctctc |
239 |
Q |
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| T |
28817043 |
agaggaagtgtttcagctctc |
28817023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 16184687 - 16184724
Alignment:
| Q |
111 |
tagtacatggtttttattggacattgctttctatagtc |
148 |
Q |
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| T |
16184687 |
tagtacatggtttttgttggatattgctttctatagtc |
16184724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 16224077 - 16224114
Alignment:
| Q |
111 |
tagtacatggtttttattggacattgctttctatagtc |
148 |
Q |
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| T |
16224077 |
tagtacatggtttttgttggatattgctttctatagtc |
16224114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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