View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_4 (Length: 550)
Name: NF14892_low_4
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25419299 - 25419059
Alignment:
| Q |
1 |
ttgatgtccatgaaaatattcatctctcttagctgaggtcatgggtgttgacaatttgttcatcgtattttcccttttcttttaagcttttgttttggtt |
100 |
Q |
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| T |
25419299 |
ttgatgtccaggaaaatattcatctctcttagctgaggtcatgggtgttgacaatttgttcatcggattttctcttttcttttaagcttttgttttggtt |
25419200 |
T |
|
| Q |
101 |
gaaatttgaattgcaaatcaaagaaaccaagaaaatgtggtaactcagactggtagtccgactagacttctgttcaccaaccaggcaacaaccgttctat |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25419199 |
gaaatttaaattgcaaatcaaagaaaccaagaaaatgtggtaactcagactggtagtccgactagacttctgttcaccaaccaggcaacaaccgttctat |
25419100 |
T |
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| Q |
201 |
tccatcatatcatagggaaatccaaccaccttttattcaca |
241 |
Q |
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| T |
25419099 |
tccatcatatcatagggaaatccaaccaccttttaatcaca |
25419059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 25418826 - 25418692
Alignment:
| Q |
398 |
ctgtcgctataaatcccgtgtgatgactgattgtgat---tggtatatctcccaactttgatactcctaatgtcctacatgcctacctccaactttaata |
494 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25418826 |
ctgtcgctataaatcccgtgtgatgactgattgtgatgattggtatatctcccaactttgatactcctaatgtcctacatgcctacctccaactttaata |
25418727 |
T |
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| Q |
495 |
tccaaaataattaaattaagttcttaagttctctt |
529 |
Q |
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| T |
25418726 |
tccaaaataattaaatgaagttcttaagttctctt |
25418692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 25419025 - 25418950
Alignment:
| Q |
283 |
acatgcaactttggattattattattttttgttgaaaaatactccaaacgacgtatttgagctggaatttgcatga |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25419025 |
acatgcaactttggattattattattttttgttgaaaaatactccaaacgacgtatttgagctggaatttgcatga |
25418950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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