View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14892_low_6 (Length: 508)
Name: NF14892_low_6
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 33 - 490
Target Start/End: Original strand, 44803460 - 44803914
Alignment:
| Q |
33 |
tatcaattttttctattaaaaataatatcacattttcattctaatattagattgtatttgttgttaatattttccttaattaatttcaacacatttcaaa |
132 |
Q |
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| T |
44803460 |
tatcaattttttctattaaaaataatatcacattttcattctaatgttagactgtatttgt---taatattttccttaattaatttcaacacatttcaaa |
44803556 |
T |
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| Q |
133 |
aactctattttttcctattctatatttttatcaatctatataaaaatggatatatttgaaaatcgaaaaataagatttataaattggggttctccagaga |
232 |
Q |
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| T |
44803557 |
aactctattttttcctattctatatttttatcaatctatataaaaatggatatatttgaaaatcgaaaaataagatttataaattggggttctccagaga |
44803656 |
T |
|
| Q |
233 |
cgacagagg---atccagcttccggttcttgttcggtttcgttcgttcgttcagttttcaccaattcaaatcaaatcaaaatctaatctttccaatggta |
329 |
Q |
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| T |
44803657 |
cgacagaggatcatccagcttccggttcttgttcggtttcgttcgttcgttcagttttcac-----caaatcaaatcaaaatataatctttccaatggta |
44803751 |
T |
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| Q |
330 |
attacttttctttcattaccagattcactcttttcattttcatcatttcaaatgttactattaatttga--nnnnnnnnnnnnnnnattattgttatatt |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44803752 |
attacttttctttcattaccagattcactcttttcattttcatcatttcaaatgttactattaatttgattattttttttatttttattattgttatatt |
44803851 |
T |
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| Q |
428 |
gtcagatgaaatttatttatgttatggatctagaataggataatttcatacgttcaatgcatg |
490 |
Q |
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| T |
44803852 |
gtcagatgaaatttatttatgttatggatctagaataggataatttcatacgttcaatgcatg |
44803914 |
T |
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