View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14892_low_9 (Length: 392)
Name: NF14892_low_9
Description: NF14892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14892_low_9 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 28945976 - 28946357
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28945976 |
catcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
28946075 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28946076 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctct |
28946175 |
T |
|
| Q |
211 |
ttcacaccaaccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgccaccctcacattcttcttcacttcct |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
28946176 |
ttcacaccatccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgtcaccctcacatttttctttacttcct |
28946275 |
T |
|
| Q |
311 |
ccaccttctccttgacaccctccaaatccccattacttgaatcacaaatttcagccacattcttcttattcttcgaattcct |
392 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28946276 |
ccaccttctccttcacaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattcttcgaattcct |
28946357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 28946339 - 28946468
Alignment:
| Q |
263 |
tcttattcctcaaattccttgccaccctcacattcttcttcacttcctccaccttctccttgacaccctccaaatccccattacttgaatcacaaatttc |
362 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||||||| || || |||||||| ||| | ||||||| |||||||| ||||||||||| || |
|
|
| T |
28946339 |
tcttattcttcgaattccttgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctc |
28946438 |
T |
|
| Q |
363 |
agccacattcttcttattcttcgaattcct |
392 |
Q |
| |
|
| | ||||||||||||||||||||||||| |
|
|
| T |
28946439 |
aacagcattcttcttattcttcgaattcct |
28946468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 34823339 - 34823720
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34823339 |
catcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
34823438 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34823439 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctct |
34823538 |
T |
|
| Q |
211 |
ttcacaccaaccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgccaccctcacattcttcttcacttcct |
310 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
34823539 |
ttcacaccatccaaatccccaatactcaattcagaaacccccattttatttatcttattcctcaaattccttgtcaccctcacatttttctttacttcct |
34823638 |
T |
|
| Q |
311 |
ccaccttctccttgacaccctccaaatccccattacttgaatcacaaatttcagccacattcttcttattcttcgaattcct |
392 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34823639 |
ccaccttctcctttacaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattcttcgaattcct |
34823720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 34823702 - 34823831
Alignment:
| Q |
263 |
tcttattcctcaaattccttgccaccctcacattcttcttcacttcctccaccttctccttgacaccctccaaatccccattacttgaatcacaaatttc |
362 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||||||| || || |||||||| ||| | ||||||| |||||||| ||||||||||| || |
|
|
| T |
34823702 |
tcttattcttcgaattccttgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaaatctc |
34823801 |
T |
|
| Q |
363 |
agccacattcttcttattcttcgaattcct |
392 |
Q |
| |
|
| | ||||||||||||||||||||||||| |
|
|
| T |
34823802 |
aacagcattcttcttattcttcgaattcct |
34823831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 42232675 - 42232306
Alignment:
| Q |
11 |
catcatcacaattctctttaccacctccatcaccaacaatctcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaacatt |
110 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
42232675 |
catcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttccccttagcaccacccctcgttttcttattctcaacatt |
42232576 |
T |
|
| Q |
111 |
ctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctct |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
42232575 |
ctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtcatcctcacattcctcggctcc------------ |
42232488 |
T |
|
| Q |
211 |
ttcacaccaaccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgccaccctcacattcttcttcacttcct |
310 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42232487 |
ttcacaccatcgaaatccccaacactcaattcagaagtccccattttattcatcttattcctcaaattccttgtcaccctcacattcttcttcacttcct |
42232388 |
T |
|
| Q |
311 |
ccaccttctccttgacaccctccaaatccccattacttgaatcacaaatttcagccacattcttcttattcttcgaattcct |
392 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||| ||| | ||||||||| |||||||||||||| |
|
|
| T |
42232387 |
ccaccttctctttgacaccctccaaatccccattactcgaatcacaaacctcaactgtattcttcttgttcttcgaattcct |
42232306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 42232391 - 42232273
Alignment:
| Q |
196 |
tcctccaccttctctttcacaccaaccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgccaccctcacat |
295 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||| | ||| ||||| | | | |||| |||| ||| || ||||||||| ||||||||||| |
|
|
| T |
42232391 |
tcctccaccttctctttgacaccctccaaatccccattactcgaatcacaaacctcaactgtattcttcttgttcttcgaattccttgtcaccctcacat |
42232292 |
T |
|
| Q |
296 |
tcttcttcacttcctccac |
314 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
42232291 |
tcttcttcacttcttccac |
42232273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 42232933 - 42232890
Alignment:
| Q |
14 |
catcacaattctctttaccacctccatcaccaacaatctcttcc |
57 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
42232933 |
catcacaattctctttaccatctccatcaccaacacactcttcc |
42232890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University