View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14893_high_4 (Length: 344)
Name: NF14893_high_4
Description: NF14893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14893_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 529948 - 530286
Alignment:
| Q |
6 |
agaagcaaaggtgatatgggtagatcgtttgggcttagatatgcgtttgttttctcctaacaacggtttatttgaggttcgcattcctttccctagagaa |
105 |
Q |
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| T |
529948 |
agaagcaaaggtgatatgggtagatcgtttgggcttagatatgcgtttgttttctcctaacaacggtttatttgaggttcgcattcctttccctagagaa |
530047 |
T |
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| Q |
106 |
gtcacagatgaaaaaggtgccaagtcaacatttaactgtatgtcacaattggcttgggaggtagaaagaaacttccatcctctggattttgagaaggtta |
205 |
Q |
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| T |
530048 |
gtcacagatgaaaaaggtgccaagtcaacatttaactgtatgtcacaattggcttgggaggtagaaagaaacttccatcctctggattttgagaaggtta |
530147 |
T |
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| Q |
206 |
caaaattgaaacacataaagtcatgatactgttgagttataannnnnnngcacaaccgcataccaatttcatcaaatatgcaagatgaaactttgttatt |
305 |
Q |
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| T |
530148 |
cagaattgaaacacataaagtcatgatactgttgagttataatttttttgcacaaccgcataccaatttcatcaaatatgcaagatgaaactttgttatt |
530247 |
T |
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| Q |
306 |
tttcaagaatatgaccatttttattgtgtttgtattctg |
344 |
Q |
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| T |
530248 |
tttcaagaatatgaccatttttattgtgtttgtattctg |
530286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 366274 - 365938
Alignment:
| Q |
6 |
agaagcaaaggtgatatgggtagatcgtttgggcttagatatgcgtttgttttctcctaacaacggtttatttgaggttcgcattcctttccctagagaa |
105 |
Q |
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| T |
366274 |
agaagctaagatgatatgggtggatcgcctgggcttggatatgcgactgttttctcctaactacggcttattctaggtccacattcatttccctagagaa |
366175 |
T |
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| Q |
106 |
gtcacagatgaaaaaggtgccaagtcaacatttaactgtatgtcacaattggcttgggaggtagaaagaaacttccatcctctggattttgagaaggtta |
205 |
Q |
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| T |
366174 |
gtcaccgatgaaaaaggtgcaaagtcgacatttaattgtatgtaacagttggcttgggaggtagaaagaaacttccatcctctggattttgagaaggtta |
366075 |
T |
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| Q |
206 |
caaaattgaaacacataaagtcatgatactgttgagttataa-nnnnnnngcacaaccgcataccaatttcatcaaatatgcaagatgaaactttgttat |
304 |
Q |
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| T |
366074 |
caaaattgaaacacataaagtcatgatactcttgagttataattttttttgcacaaccacttaccgatttaatcaaatatgcaaggtgaaactttgtaat |
365975 |
T |
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| Q |
305 |
ttttcaagaatatgaccatttttattgtgtttgtattc |
342 |
Q |
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| T |
365974 |
ttttcaagcaaatgaccattttt-tggtgtttgtattc |
365938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 520282 - 520617
Alignment:
| Q |
6 |
agaagcaaaggtgatatgggtagatcgtttgggcttagatatgcgtttgttttctcctaacaacggtttatttgaggttcgcattcctttccctagagaa |
105 |
Q |
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|||||| ||| |||||||||| ||||| ||||||| |||||||| |||||||||||||| |||| ||||| |||| | ||||| ||||| ||||||| |
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| T |
520282 |
agaagctaagatgatatgggtggatcgcctgggcttggatatgcgagtgttttctcctaactacggcttattctaggtccacattcatttccttagagaa |
520381 |
T |
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| Q |
106 |
gtcacagatgaaaaaggtgccaagtcaacatttaactgtatgtcacaattggcttgggaggtagaaagaaacttccatcctctggattttgagaaggtta |
205 |
Q |
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| T |
520382 |
gtcaccgatgaaaaaggtgcgaagtcgacatttaattgtatgtaacaattggcttgggaggtagaaagaaacttccatcctcagtattttgagaaggtta |
520481 |
T |
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| Q |
206 |
caaaattgaaacacataaagtcatgatactgttgagttataannnnnnngcacaaccgcataccaatttcatcaaatatgcaagatgaaactttgttatt |
305 |
Q |
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| T |
520482 |
cagaattgaaacacataaagtcatgatactcatgagttataatttttttgcacaaccacttaccaatttaatcaaatatgcaaggtgaaactttgtaatt |
520581 |
T |
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| Q |
306 |
tttcaagaatatgaccatttttattgtgtttgtattc |
342 |
Q |
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| T |
520582 |
tttcaagaatatgaccattttt-tggtgtttgtattc |
520617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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