View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14893_low_2 (Length: 280)

Name: NF14893_low_2
Description: NF14893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14893_low_2
NF14893_low_2
[»] chr5 (3 HSPs)
chr5 (44-178)||(290951-291085)
chr5 (192-253)||(294991-295052)
chr5 (1-51)||(291246-291296)
[»] chr7 (4 HSPs)
chr7 (113-251)||(40261425-40261563)
chr7 (111-253)||(47904240-47904383)
chr7 (183-247)||(38094696-38094760)
chr7 (165-219)||(26789034-26789088)
[»] chr3 (5 HSPs)
chr3 (120-230)||(35898860-35898970)
chr3 (113-229)||(35899590-35899707)
chr3 (183-253)||(47955231-47955301)
chr3 (120-220)||(18753730-18753831)
chr3 (183-253)||(47956101-47956171)
[»] chr2 (3 HSPs)
chr2 (183-253)||(26179625-26179695)
chr2 (165-253)||(2757744-2757832)
chr2 (183-253)||(2758464-2758534)
[»] chr8 (2 HSPs)
chr8 (176-249)||(37767499-37767572)
chr8 (180-231)||(32018221-32018272)
[»] chr1 (2 HSPs)
chr1 (170-253)||(38002945-38003028)
chr1 (182-253)||(38003589-38003660)
[»] chr6 (1 HSPs)
chr6 (183-249)||(9747427-9747493)
[»] chr4 (1 HSPs)
chr4 (176-249)||(11960095-11960168)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 291085 - 290951
Alignment:
Q  44 tataaaagatgcataattaaaataaattttcatgagtacattagcaacagtggaagaagagatgggcaagagttatttaacagagactaacggtgtgaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  291085 tataaaagatgcataattaaaataaattttcatgagtacattagcaacagtggaagaagagatgggcaagagttatttaacagagactaacggtgtgaaa 290986  T
Q  144 tacaaagggaggtctttatctatttaaataataaa 178  Q
    |||||||||||||||||||||||||||||||||||    
T  290985 tacaaagggaggtctttatctatttaaataataaa 290951  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 294991 - 295052
Alignment:
Q  192 tgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  294991 tgtttaattaaaaactagagggggtgttagtgtcatttaagaatacctgaagggaggtgagt 295052  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 291296 - 291246
Alignment:
Q  1 aaataaaggacaataattatcagccaacaaattaaataccaactataaaag 51  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  291296 aaataaaggacaataattatcagccaacaaattaaatacaaattataaaag 291246  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 40261425 - 40261563
Alignment:
Q  113 gagttatttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagagg 212  Q
    |||||||||||| ||||||||| | || | ||||| ||||||||  || || ||||| | || |||||| |||||||| |||||| ||||||||||||||    
T  40261425 gagttatttaacggagactaacagcgttagatacagagggaggtgcttgtccatttagacaacaaataagggaggttaatgtttaattaaaaactagagg 40261524  T
Q  213 gggtgttagtgtcatttaaaaatacttcaagggaggtga 251  Q
    || |||||||||||| ||| ||||| | |||||||||||    
T  40261525 ggatgttagtgtcatataagaataccttaagggaggtga 40261563  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 47904383 - 47904240
Alignment:
Q  111 aagagttatttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactaga 210  Q
    |||||||| |||||||||| |||||  || || |  ||||||||||  || ||||||| |||||||||||| |||  ||| |||| | ||||||||||||    
T  47904383 aagagttaattaacagagagtaacgacgttaagtgaaaagggaggtggttgtctatttgaataataaataagggatattagtgttaacttaaaaactaga 47904284  T
Q  211 gggggtgttagtgtcattt-aaaaatacttcaagggaggtgagt 253  Q
    |||||||| ||||| |||| ||||| |||| |||||||||||||    
T  47904283 gggggtgtcagtgttatttaaaaaaaactttaagggaggtgagt 47904240  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 38094760 - 38094696
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggag 247  Q
    |||||||| ||||| ||| ||||||||||||||||||||||  |||||| || || |||||||||    
T  38094760 ggaggttaatgttttgttcaaaactagagggggtgttagtgctatttaagaagacctcaagggag 38094696  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 26789034 - 26789088
Alignment:
Q  165 atttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgtt 219  Q
    |||| ||||| || ||| |||||||  ||||||||||||||||||||||||||||    
T  26789034 atttgaataaaaattaagggaggtttgtgtttagttaaaaactagagggggtgtt 26789088  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 35898970 - 35898860
Alignment:
Q  120 ttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgtt 219  Q
    |||||||||||||||||||  || |  ||||||||||  || ||||||| ||||| |||||| |||||||| |||| ||||||||| |||||||||||||    
T  35898970 ttaacagagactaacggtgctaagtgaaaagggaggtggttgtctatttgaataaaaaataagggaggttagtgttgagttaaaaaatagagggggtgtt 35898871  T
Q  220 agtgtcattta 230  Q
    ||||| |||||    
T  35898870 agtgttattta 35898860  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 35899590 - 35899707
Alignment:
Q  113 gagttatttaacagagactaacggtgtgaaa-tacaaagggaggtctttatctatttaaataataaataaaggaggttattgtttagttaaaaactagag 211  Q
    |||||| |||| |||||||||||||||  || || |||||||||| |||  ||||||  |||| || ||| |||||||| |||| |||||||||||||||    
T  35899590 gagttaattaatagagactaacggtgtttaagtataaagggaggtgtttgcctatttgtataacaattaagggaggttagtgttgagttaaaaactagag 35899689  T
Q  212 ggggtgttagtgtcattt 229  Q
    ||||||||||||| ||||    
T  35899690 ggggtgttagtgtaattt 35899707  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 47955301 - 47955231
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||||||| |||||| || ||||||||||||||||||||||  |||||| || ||||||||||||||||||    
T  47955301 ggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagt 47955231  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 18753730 - 18753831
Alignment:
Q  120 ttaacagagactaacggtgtgaaatacaaagggaggtctttatctatttaaataataaa-taaaggaggttattgtttagttaaaaactagagggggtgt 218  Q
    |||||||||||||||||||| || |  ||||||||||  || ||||||| ||||| ||| ||| |||||||| |||| ||||||||| ||||||||||||    
T  18753730 ttaacagagactaacggtgttaagtgaaaagggaggtggttgtctatttgaataaaaaaataagggaggttagtgttgagttaaaaaatagagggggtgt 18753829  T
Q  219 ta 220  Q
    ||    
T  18753830 ta 18753831  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 47956101 - 47956171
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||| ||| |||||||||  |||||||||||||||||||||  |||||| || || ||||| |||||||||    
T  47956101 ggagattagtgtttagttttaaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagt 47956171  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 26179625 - 26179695
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||||||  ||||||||| |||||||||||||||||| |||| |||||| || || |||||||||||||||    
T  26179625 ggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagt 26179695  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 2757832 - 2757744
Alignment:
Q  165 atttaaataataaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||||||||| || ||| ||| || | |||||| ||||||| |||||||| ||||||||| |||||| || || |||||||||||||||    
T  2757832 atttaaataaaaattaatggatgtaagtgtttaattaaaaattagaggggatgttagtgttatttaagaagacctcaagggaggtgagt 2757744  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 2758464 - 2758534
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||||||| ||||||||| |||| |||||||| ||||||||| |||||| || || | |||||||||||||    
T  2758464 ggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagt 2758534  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 37767499 - 37767572
Alignment:
Q  176 aaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggt 249  Q
    |||||| |||||||  ||||||||||||||||||||||| |||| |||| |||||| ||||| ||| |||||||    
T  37767499 aaataagggaggtttatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggt 37767572  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 32018272 - 32018221
Alignment:
Q  180 aaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaa 231  Q
    ||||||||||| |||||||||||||| |||||||  ||||||||| ||||||    
T  32018272 aaaggaggttagtgtttagttaaaaattagagggaatgttagtgttatttaa 32018221  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 38003028 - 38002945
Alignment:
Q  170 aataataaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    ||||| || ||| |||||| | |||||| |||||||||||||||| ||||||||  |||||| || || | |||||||||||||    
T  38003028 aataaaaattaagggaggtaagtgtttaattaaaaactagaggggatgttagtgctatttaagaaaacctaaagggaggtgagt 38002945  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 38003589 - 38003660
Alignment:
Q  182 aggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggtgagt 253  Q
    |||| |||| |||||||||||||| |||||||| ||||||||  |||||| || || | |||||||||||||    
T  38003589 aggaagttagtgtttagttaaaaagtagaggggttgttagtgctatttaagaagaccttaagggaggtgagt 38003660  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 9747493 - 9747427
Alignment:
Q  183 ggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggt 249  Q
    |||||| | ||| ||||| ||||||||||||||| | ||||||||||||| | |||| |||||||||    
T  9747493 ggaggtgaatgtctagtttaaaactagagggggtctaagtgtcatttaaagagactttaagggaggt 9747427  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 11960168 - 11960095
Alignment:
Q  176 aaataaaggaggttattgtttagttaaaaactagagggggtgttagtgtcatttaaaaatacttcaagggaggt 249  Q
    |||||| |||||||  ||||||||| |||||||||||||||||| |||  ||||||  | || |||||||||||    
T  11960168 aaataagggaggtttgtgtttagtttaaaactagagggggtgtttgtgctatttaactaaacctcaagggaggt 11960095  T

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