View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14894_high_4 (Length: 410)
Name: NF14894_high_4
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14894_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 41589004 - 41588714
Alignment:
| Q |
1 |
tgacagggaaatatcaatcaagcaaataaaaaccataaaattcattttgccagttttttcccctagcaaaataatacatgtagtctgaaggaataactat |
100 |
Q |
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| T |
41589004 |
tgacagggaaatatcaatcaagcaaataaaaaccataaaattcattttgccagttttttcccctagcaaaataatacatgtagtctgaaggaataactat |
41588905 |
T |
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| Q |
101 |
gaatcccccactgaaaaacattattactaaacttagttatgctatgtatcaatgtgctactaagcaacttgaagagctatgcctatgttttaagagttag |
200 |
Q |
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| T |
41588904 |
gaat-ccccactgaaaaacattattactaaacttggttatgctatgtatcaatgtggtactaagcaaattgaagagctatgcc----------------- |
41588823 |
T |
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| Q |
201 |
cttaaaataatctgtttgattttcagtctctaatgaaaaaactatttaacttgtttacgcctttcatcctcaataccgtattattacgaccttgttctac |
300 |
Q |
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| T |
41588822 |
--taaaataatctgtttgattttcag--tctaatgaaaaaactatttaacttgtttacgcctttcatcctcaataccgtattattacgaccttgttctac |
41588727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 41588715 - 41588669
Alignment:
| Q |
344 |
cagtaaaaacaacactgtatttttctagcgttactactaactatcaa |
390 |
Q |
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| T |
41588715 |
cagtaaaaacaacactgtatttttctagtgttactactaactatcaa |
41588669 |
T |
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