View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14894_high_8 (Length: 232)

Name: NF14894_high_8
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14894_high_8
NF14894_high_8
[»] chr6 (24 HSPs)
chr6 (1-232)||(27588786-27589017)
chr6 (81-232)||(26807090-26807242)
chr6 (56-232)||(26639760-26639936)
chr6 (56-232)||(26745726-26745902)
chr6 (52-162)||(25079082-25079192)
chr6 (97-232)||(26963751-26963890)
chr6 (103-232)||(26650512-26650641)
chr6 (103-232)||(26756480-26756609)
chr6 (56-222)||(26629030-26629195)
chr6 (56-222)||(26735006-26735171)
chr6 (62-218)||(27506882-27507038)
chr6 (160-215)||(25078358-25078413)
chr6 (166-232)||(26627748-26627814)
chr6 (166-232)||(26733725-26733791)
chr6 (97-232)||(27419365-27419500)
chr6 (153-225)||(31288562-31288634)
chr6 (166-225)||(27702644-27702703)
chr6 (190-232)||(27660701-27660743)
chr6 (134-174)||(26060531-26060571)
chr6 (134-174)||(26080501-26080541)
chr6 (56-132)||(27423037-27423112)
chr6 (126-213)||(27424168-27424255)
chr6 (136-217)||(26889908-26889990)
chr6 (188-232)||(27423116-27423160)
[»] chr4 (8 HSPs)
chr4 (97-232)||(5082478-5082613)
chr4 (171-232)||(18675035-18675096)
chr4 (171-232)||(18685608-18685669)
chr4 (127-232)||(18683307-18683413)
chr4 (171-232)||(18693090-18693151)
chr4 (171-232)||(18719565-18719626)
chr4 (171-232)||(18726862-18726923)
chr4 (171-232)||(18650916-18650977)
[»] scaffold0003 (4 HSPs)
scaffold0003 (97-232)||(67863-67998)
scaffold0003 (56-132)||(64251-64326)
scaffold0003 (126-213)||(63108-63195)
scaffold0003 (188-232)||(64203-64247)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27588786 - 27589017
Alignment:
Q  1 catgtttttgcaattttgaacttgatataaacgatgatataagatgaagtttaacttgacctgttggacaaaagctacatatatagattaacagtattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588786 catgtttttgcaattttgaacttgatataaacgatgatataagatgaagtttaacttgacctgttggacaaaagctacatatatagattaacagtattca 27588885  T
Q  101 tactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588886 tactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgatt 27588985  T
Q  201 aaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||||||||||||||||||||||||    
T  27588986 aaaagcatttatgctttcaaagtattaggatc 27589017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 26807242 - 26807090
Alignment:
Q  81 atatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttggg-ataataaccaatttctttttcaaaaga 179  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  26807242 atatacattaacagtatttatactccctaagaaatgacaagttatgcatattcattaatatattactttggggataataaccaatttctttttcaaaaga 26807143  T
Q  180 tctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  26807142 tctttcacaaagattatgactaaaagcatttatgctttcaaagtataaggatc 26807090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 26639936 - 26639760
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggata 155  Q
    |||||||||||||| ||||| ||| || || |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| || | |||||||    
T  26639936 ttgacctgttggacgaaagcaacacatttacattaactgtattcatattccctaagaaatgacaagttatgcatatttagaaatataatattgtgggata 26639837  T
Q  156 ataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||| |||||||||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  26639836 ataatcaatttcttttttaaaagacctctcacaaagattatgattaaaagcatttatgttttcaaagtataaggatc 26639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 26745902 - 26745726
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggata 155  Q
    |||||||||||||| ||||| ||| || || |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| || | |||||||    
T  26745902 ttgacctgttggacgaaagcaacacatttacattaactgtattcatattccctaagaaatgacaagttatgcatatttagaaatataatattgtgggata 26745803  T
Q  156 ataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||| |||||||||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  26745802 ataatcaatttcttttttaaaagacctctcacaaagattatgattaaaagcatttatgttttcaaagtataaggatc 26745726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 25079192 - 25079082
Alignment:
Q  52 taacttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgg 151  Q
    |||||| ||||||||||||||| ||||| ||  | |||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25079192 taacttcacctgttggacaaaatctacacattgacattaacggtcttcacactccctaagaaatgacaagttatgcatatttagaaatatattactttgg 25079093  T
Q  152 gataataacca 162  Q
    |||||||||||    
T  25079092 gataataacca 25079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 26963890 - 26963751
Alignment:
Q  97 ttcatactccctaagaaatgacaagt----tatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaaga 192  Q
    ||||| ||| ||||||||||||||||     ||||||||| | |||||||||||| |||||||  || |||||||||||||||||||||||||| |||||    
T  26963890 ttcatcctctctaagaaatgacaagtcatgcatgcatatttataaatatattactatgggatatcaatcaatttctttttcaaaagatctttcataaaga 26963791  T
Q  193 ttatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||| ||||||| || ||||||||||| ||||||    
T  26963790 ttatgattaagagcatttgtggtttcaaagtataaggatc 26963751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 26650641 - 26650512
Alignment:
Q  103 ctccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgattaa 202  Q
    |||||||||||||||||||| |||| |||| | ||| ||| |||| ||| |||  || |||| |||| |||||||||||||||| |||||||||||||||    
T  26650641 ctccctaagaaatgacaagtcatgcgtatttataaaaataatactatggaatagaaatcaatctcttcttcaaaagatctttcataaagattatgattaa 26650542  T
Q  203 aagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||| ||||||||||| ||||||    
T  26650541 aagcatttatggtttcaaagtataaggatc 26650512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 26756609 - 26756480
Alignment:
Q  103 ctccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgattaa 202  Q
    |||||||||||||||||||| |||| |||| | ||| ||| |||| ||| |||  || |||| |||| |||||||||||||||| |||||||||||||||    
T  26756609 ctccctaagaaatgacaagtcatgcgtatttataaaaataatactatggaatagaaatcaatctcttcttcaaaagatctttcataaagattatgattaa 26756510  T
Q  203 aagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||| ||||||||||| ||||||    
T  26756509 aagcatttatggtttcaaagtataaggatc 26756480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 26629195 - 26629030
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggata 155  Q
    ||||||||||||||||||| |||| || |  || ||| || ||||||||  |||||||||||||||| |||||  || | |||||||||||| | | |||    
T  26629195 ttgacctgttggacaaaagatacagatttttat-aactgtcttcatactttctaagaaatgacaagtcatgcacttttataaatatattactattgtata 26629097  T
Q  156 ataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaag 222  Q
       | |||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  26629096 gccatcaatttctttttcagaagatctttcataaagattatgattaaaagcgtttatggtttcaaag 26629030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 26735171 - 26735006
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggata 155  Q
    ||||||||||||||||||| |||| || |  || ||| || ||||||||  |||||||||||||||| |||||  || | |||||||||||| | | |||    
T  26735171 ttgacctgttggacaaaagatacagatttttat-aactgtcttcatactttctaagaaatgacaagtcatgcacttttataaatatattactattgtata 26735073  T
Q  156 ataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaag 222  Q
       | |||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  26735072 gccatcaatttctttttcagaagatctttcataaagattatgattaaaagcgtttatggtttcaaag 26735006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 27506882 - 27507038
Alignment:
Q  62 tgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataacc 161  Q
    ||||||||||||||||   || || |||||  || |||||||| | ||| |||| |||||| ||||||||| | ||||||||| || ||| |||| || |    
T  27506882 tgttggacaaaagctatccatttacattaattgtcttcatactacttaacaaattacaagtcatgcatatttataaatatattgctatggaataacaatc 27506981  T
Q  162 aatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttc 218  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||| ||||| ||||    
T  27506982 aatttcttattcaaaagatccttcataaagattatgattaaaagcacttatgatttc 27507038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 25078413 - 25078358
Alignment:
Q  160 ccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgct 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25078413 ccaatttctttttcaaaagatctttcacaaagattaagattaaaagcatttatgct 25078358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 26627814 - 26627748
Alignment:
Q  166 tctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  26627814 tctttttcaaatgatctttcataaagattatgattaaaagcatttatgctttcgaagtataaggatc 26627748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 26733791 - 26733725
Alignment:
Q  166 tctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  26733791 tctttttcaaatgatctttcataaagattatgattaaaagcatttatgctttcgaagtataaggatc 26733725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 27419365 - 27419500
Alignment:
Q  97 ttcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattat 196  Q
    |||||| | ||||||||||||||||||||   ||||   |||||||||| ||| ||||||| | ||| |||||||| ||||||| ||||  ||| |||||    
T  27419365 ttcataatacctaagaaatgacaagttattgctatttgaaaatatattattttcggataatgatcaacttctttttaaaaagatgtttcgaaaatattat 27419464  T
Q  197 gattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||| ||| | ||||||||||||||||| ||||||    
T  27419465 gattataagaacttatgctttcaaagtataaggatc 27419500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 31288634 - 31288562
Alignment:
Q  153 ataataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtat 225  Q
    ||||||| ||| |||||| | |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  31288634 ataataatcaacttctttctgaaaatatctttcataaagtttatgattaaaagcatttatgctttcaaagtat 31288562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 27702644 - 27702703
Alignment:
Q  166 tctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtat 225  Q
    |||||||||||  |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  27702644 tctttttcaaataatctttcataaagattatgattaaaaccatttatgctttcgaagtat 27702703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 27660701 - 27660743
Alignment:
Q  190 agattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  27660701 agattatgattaaaagcatttattctttcaaagtataaggatc 27660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 26060571 - 26060531
Alignment:
Q  134 agaaatatattactttgggataataaccaatttctttttca 174  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  26060571 agaaatatattactttggcataataatcaatttctttttca 26060531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 26080541 - 26080501
Alignment:
Q  134 agaaatatattactttgggataataaccaatttctttttca 174  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  26080541 agaaatatattactttggcataataatcaatttctttttca 26080501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 27423037 - 27423112
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatatt 132  Q
    ||||||||||||||||||| |||| || |  || ||| || ||||||| |||||||||||||||||| |||||||||    
T  27423037 ttgacctgttggacaaaagatacacatttttat-aacggtcttcatacaccctaagaaatgacaagtcatgcatatt 27423112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 27424168 - 27424255
Alignment:
Q  126 gcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatg 213  Q
    ||||||| | |||||||||||| || |||   || ||||||||||||||||  |||||| | ||| |||||||| |||||||||||||    
T  27424168 gcatatttataaatatattactatgagatggcaatcaatttctttttcaaattatcttttataaatattatgatcaaaagcatttatg 27424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 26889990 - 26889908
Alignment:
Q  136 aaatatattactttgggataataaccaatttctttttc-aaaagatctttcacaaagattatgattaaaagcatttatgcttt 217  Q
    |||||||||||| | | |||| || |||||| |||||| ||||||||||  | |||||||||||||| | |||||||||||||    
T  26889990 aaatatattactattgaataacaatcaatttttttttccaaaagatcttcaataaagattatgattacacgcatttatgcttt 26889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 27423116 - 27423160
Alignment:
Q  188 aaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  27423116 aaagattataattaaaagtatttatggtttcaaagtataaggatc 27423160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 5082613 - 5082478
Alignment:
Q  97 ttcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattat 196  Q
    |||||| | |||||||||||||||||||| ||||||   |||||||||| ||| ||||||| | |||||||||||| ||| |||||||| || ||| |||    
T  5082613 ttcataatacctaagaaatgacaagttattcatatttgaaaatatattattttaggataatgatcaatttctttttgaaaggatctttcccagagactat 5082514  T
Q  197 gattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| ||||||||| || ||||||    
T  5082513 gattaaaagcatttatactttcaaagcataaggatc 5082478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18675035 - 18675096
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||    
T  18675035 ttcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaagtataaggatc 18675096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18685608 - 18685669
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||    
T  18685608 ttcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaagtataaggatc 18685669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 18683307 - 18683413
Alignment:
Q  127 catattcagaaatatattactttgggataataaccaatttcttt-ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtat 225  Q
    |||||| ||||| |||||||| ||| |||| ||||||  | ||| |||||||||||||||| | | |||||||||||||  |||||||||||||||||||    
T  18683307 catatttagaaaaatattactatggaataacaaccaacgtttttattcaaaagatctttcatagaaattatgattaaaacaatttatgctttcaaagtat 18683406  T
Q  226 taggatc 232  Q
     ||||||    
T  18683407 aaggatc 18683413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18693090 - 18693151
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| ||||||    
T  18693090 ttcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaggtataaggatc 18693151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18719565 - 18719626
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| | ||||||||||||||| ||||| |||||||||||||| ||||||    
T  18719565 ttcaaaagatctttcatagagattatgattaaaaccatttttgctttcaaagtataaggatc 18719626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18726862 - 18726923
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    |||||||||||||||| | ||||||||||||||| ||||| |||||||||||||| ||||||    
T  18726862 ttcaaaagatctttcatagagattatgattaaaaccatttttgctttcaaagtataaggatc 18726923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 18650916 - 18650977
Alignment:
Q  171 ttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||||||||||   ||||||||||||||| ||||||| |||||||||||| ||||||    
T  18650916 ttcaaaagatctttcattgagattatgattaaaaccatttatactttcaaagtataaggatc 18650977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 67998 - 67863
Alignment:
Q  97 ttcatactccctaagaaatgacaagttatgcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattat 196  Q
    |||||| | ||||||||||||||||||||   ||||   |||||||||| ||| ||||||| | ||| |||||||| ||||||| ||||  ||| |||||    
T  67998 ttcataatacctaagaaatgacaagttattgctatttgaaaatatattattttcggataatgatcaacttctttttaaaaagatgtttcgaaaatattat 67899  T
Q  197 gattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||| ||| | ||||||||||||||||| ||||||    
T  67898 gattataagaacttatgctttcaaagtataaggatc 67863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 64326 - 64251
Alignment:
Q  56 ttgacctgttggacaaaagctacatatatagattaacagtattcatactccctaagaaatgacaagttatgcatatt 132  Q
    ||||||||||||||||||| |||| || |  || ||| || ||||||| |||||||||||||||||| |||||||||    
T  64326 ttgacctgttggacaaaagatacacatttttat-aacggtcttcatacaccctaagaaatgacaagtcatgcatatt 64251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 63195 - 63108
Alignment:
Q  126 gcatattcagaaatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatg 213  Q
    ||||||| | |||||||||||| || |||   || ||||||||||||||||  |||||| | ||| |||||||| |||||||||||||    
T  63195 gcatatttataaatatattactatgagatggcaatcaatttctttttcaaattatcttttataaatattatgatcaaaagcatttatg 63108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 64247 - 64203
Alignment:
Q  188 aaagattatgattaaaagcatttatgctttcaaagtattaggatc 232  Q
    ||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  64247 aaagattataattaaaagtatttatggtttcaaagtataaggatc 64203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University