View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14894_low_1 (Length: 457)

Name: NF14894_low_1
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14894_low_1
NF14894_low_1
[»] chr3 (3 HSPs)
chr3 (7-142)||(12404829-12404964)
chr3 (304-442)||(12404459-12404597)
chr3 (181-256)||(12404685-12404760)
[»] chr7 (2 HSPs)
chr7 (196-266)||(18037851-18037921)
chr7 (181-209)||(24937858-24937886)
[»] chr1 (1 HSPs)
chr1 (176-268)||(13643596-13643688)
[»] chr8 (2 HSPs)
chr8 (226-268)||(34085205-34085247)
chr8 (187-268)||(3137433-3137514)
[»] chr6 (4 HSPs)
chr6 (181-214)||(9213095-9213128)
chr6 (186-247)||(10008225-10008286)
chr6 (203-268)||(33607750-33607815)
chr6 (181-209)||(28048799-28048827)
[»] chr5 (2 HSPs)
chr5 (13-66)||(38727936-38727989)
chr5 (181-209)||(14152530-14152558)
[»] chr4 (1 HSPs)
chr4 (181-209)||(37461824-37461852)
[»] chr2 (1 HSPs)
chr2 (180-260)||(33635539-33635619)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 12404964 - 12404829
Alignment:
Q  7 agagagatgaagatcatgtggagagatatcaacaggaggtgctcttatcctttcccatggaattccacactctctagcttctcttcttccatgtgatgga 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12404964 agagatatgaagatcatgtggagagatatcaacaggaggtgctcttatcctttcccatggaattccacactctctagcttctcttcttccatgtgaagga 12404865  T
Q  107 tacctataacaagcaatcaattaatcaatatctaca 142  Q
    |||||||||||||||||||||||| |||||||||||    
T  12404864 tacctataacaagcaatcaattaaccaatatctaca 12404829  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 304 - 442
Target Start/End: Complemental strand, 12404597 - 12404459
Alignment:
Q  304 aaatatataaccaatgtgaaccaatttaatacataattgattccatgagatggcccaattaagcatgtgattatcgaaaatcataaaaaatttaccttgc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  12404597 aaatatataaccaatgtgaaccaatttaatacataatagattccatgagatgacacacttaagcatgtgattatcgaaaatcataaaaaatttaccttgc 12404498  T
Q  404 tagaaaggtattggttcgcgaatcatagctaagttcagc 442  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12404497 tagaaaggtattggttcgcgaatcatagctaagttcagc 12404459  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 12404760 - 12404685
Alignment:
Q  181 ttttataaaaagtggtgtaattattacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatg 256  Q
    ||||||||||||| |||||||  ||||||| ||| ||||| | |||||||||||||| ||||||  ||||||||||    
T  12404760 ttttataaaaagtagtgtaatcgttacttgctcaaaagaaccaatttatactttcaagacaaaaagtttatttatg 12404685  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 18037921 - 18037851
Alignment:
Q  196 tgtaattattacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatgaatttcttaa 266  Q
    ||||||||||| ||||||| ||| | | ||||||| |||||| |||||||||||||||||| |||||||||    
T  18037921 tgtaattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttatttatggatttcttaa 18037851  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 24937858 - 24937886
Alignment:
Q  181 ttttataaaaagtggtgtaattattactt 209  Q
    |||||||||||||||||||||||||||||    
T  24937858 ttttataaaaagtggtgtaattattactt 24937886  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 13643596 - 13643688
Alignment:
Q  176 taaaattttataaaaagtggtgtaattattacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatgaatttcttaacc 268  Q
    ||||||||||| |||||||||||||| |||| ||  ||| ||| | || |||||| |||||| ||||  |||||| ||||||||| |||||||    
T  13643596 taaaattttattaaaagtggtgtaataattaatttgtcaaaagtaacggtttatattttcaagacaatttttttacttatgaattccttaacc 13643688  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 34085247 - 34085205
Alignment:
Q  226 ttatactttcaacacaaaatttttatttatgaatttcttaacc 268  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||    
T  34085247 ttatattttcaaaacaaattttttatttatgaatttcttaacc 34085205  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 3137433 - 3137514
Alignment:
Q  187 aaaaagtggtgtaattattacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatgaatttcttaacc 268  Q
    ||||||| ||||||| |||||||||||| ||| | |   ||| | |||||| ||||||||| ||||| ||||||||||||||    
T  3137433 aaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatttctgaatttcttaacc 3137514  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 9213128 - 9213095
Alignment:
Q  181 ttttataaaaagtggtgtaattattacttgatca 214  Q
    ||||||||||||| ||||||||||||||||||||    
T  9213128 ttttataaaaagtagtgtaattattacttgatca 9213095  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 10008225 - 10008286
Alignment:
Q  186 taaaaagtggtgtaattattacttgatcagaagaatcgatttatactttcaacacaaaattt 247  Q
    ||||||||||||||||||||||||||||| ||| | |  |||||| ||| || |||||||||    
T  10008225 taaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaattt 10008286  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 33607815 - 33607750
Alignment:
Q  203 attacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatgaatttcttaacc 268  Q
    |||||||||||||||| | |  |||||| ||| |  ||| ||||||||||||||||||||||||||    
T  33607815 attacttgatcagaagtaacactttatattttaatgacataatttttatttatgaatttcttaacc 33607750  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 28048827 - 28048799
Alignment:
Q  181 ttttataaaaagtggtgtaattattactt 209  Q
    |||||||||||||||||||||||||||||    
T  28048827 ttttataaaaagtggtgtaattattactt 28048799  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 38727936 - 38727989
Alignment:
Q  13 atgaagatcatgtggagagatatcaacaggaggtgctcttatcctttcccatgg 66  Q
    |||||||||||||||||   |||| ||||| |||||||||| ||||||||||||    
T  38727936 atgaagatcatgtggaggcgtatcgacaggcggtgctcttagcctttcccatgg 38727989  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 14152558 - 14152530
Alignment:
Q  181 ttttataaaaagtggtgtaattattactt 209  Q
    |||||||||||||||||||||||||||||    
T  14152558 ttttataaaaagtggtgtaattattactt 14152530  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 37461852 - 37461824
Alignment:
Q  181 ttttataaaaagtggtgtaattattactt 209  Q
    |||||||||||||||||||||||||||||    
T  37461852 ttttataaaaagtggtgtaattattactt 37461824  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 33635539 - 33635619
Alignment:
Q  180 attttataaaaagtggtgtaattattacttgatcagaagaatcgatttatactttcaacacaaaatttttatttatgaatt 260  Q
    ||||||||||||||| |||||||||||||| |||| |||     ||||||| |||||| ||||| |||| |||||| ||||    
T  33635539 attttataaaaagtgatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaatttttcatttataaatt 33635619  T

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