View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14894_low_10 (Length: 237)
Name: NF14894_low_10
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14894_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26430322 - 26430541
Alignment:
| Q |
1 |
ccttaaccagaggccattaaccaatcgagtcaaacagaagatgacaatatagcaagaaatttaaataatacctgccagcctgcttcaatgctgttgagat |
100 |
Q |
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| T |
26430322 |
ccttaaccggaggccattaaccaatcgattcaaacagaagatgacaatatagcaagaaatttaaataatacctgccagcctgcttcaatgctgttgagat |
26430421 |
T |
|
| Q |
101 |
cttgaccaaaggcaccagccaaaatccaaatttgagacagactgaattcattaggttgttgaatttttgggtcccaaacgtttatggttgcctttgctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26430422 |
cttgaccaaaggcaccagccaaaatccaaatttgagacagactgaattcattaggttgttgaatttttgggtcccaaacgtttatggttgcctttgctcc |
26430521 |
T |
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| Q |
201 |
atagaaatcacctccctcca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
26430522 |
atagaaatcacctccctcca |
26430541 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 27752850 - 27752942
Alignment:
| Q |
113 |
caccagccaaaatccaaatttgagacagactgaattcattaggttgttgaatttttgggtcccaaacgtttatggttgcctttgctccataga |
205 |
Q |
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| T |
27752850 |
caccatccaaaatccaaatttgagacagactcaactcgtttggttgttgaatttttaggcgccaaacgtttatagttgcctttgatccataga |
27752942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 36692198 - 36692061
Alignment:
| Q |
69 |
tacctgccagcctgcttcaatgctgttgagatcttgaccaaaggcaccagccaaaatccaaatttgagacagactgaattcattaggttgttgaattttt |
168 |
Q |
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| T |
36692198 |
tacctgccagccagcttcgatgctgttaagatcttgaccaaatgaacctcctaatacccaaatctgagacaaactgaactcattagtctgctgtatcttt |
36692099 |
T |
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| Q |
169 |
gggtcccaaacgtttatggttgcctttgctccatagaa |
206 |
Q |
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| T |
36692098 |
ggttcccaaacatttatagtagcctttgctccatagaa |
36692061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 42763546 - 42763509
Alignment:
| Q |
55 |
agaaatttaaataatacctgccagcctgcttcaatgct |
92 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
42763546 |
agaaatttaaataatacctgccaacctgcttcaatgct |
42763509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 42806299 - 42806262
Alignment:
| Q |
55 |
agaaatttaaataatacctgccagcctgcttcaatgct |
92 |
Q |
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||||||||||| ||||||||||| |||||||||||||| |
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| T |
42806299 |
agaaatttaaacaatacctgccaacctgcttcaatgct |
42806262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 33049518 - 33049481
Alignment:
| Q |
55 |
agaaatttaaataatacctgccagcctgcttcaatgct |
92 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
33049518 |
agaaatttaaataatacctgccaacctgcttcaatgct |
33049481 |
T |
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