View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14894_low_2 (Length: 430)
Name: NF14894_low_2
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14894_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 49274436 - 49274022
Alignment:
| Q |
1 |
aaaaatctccaaacatgtcttttgctagttagtttaatcatgaatgtgaactatgattatcagttctccacaagattacaaacaggaaacacattcatag |
100 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| || |
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| T |
49274436 |
aaaaatctccaaacattttttttgctagttagtttaatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacattcgcag |
49274337 |
T |
|
| Q |
101 |
atgttttgaagtttcaatacatttaaggaccataatgacatcacctatcacattaagggaccaatagattgtttactcattatttacatcaaatcataat |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||| || || |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
49274336 |
atgttttgaagtttcaatacatttaaggatcataatgacaccatctctcacattaagggaccaataggttgtttactcattatttgcatcaaatcataat |
49274237 |
T |
|
| Q |
201 |
gaaattaattctttttattttatacatatcctatggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274236 |
gaaattaattctttttattttatacatatcctatggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgattt |
49274137 |
T |
|
| Q |
301 |
cacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgat |
400 |
Q |
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| T |
49274136 |
cacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgat |
49274037 |
T |
|
| Q |
401 |
atttcctgttgttat |
415 |
Q |
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||||||||||||||| |
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| T |
49274036 |
atttcctgttgttat |
49274022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 245 - 415
Target Start/End: Original strand, 49255441 - 49255611
Alignment:
| Q |
245 |
attgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctcta |
344 |
Q |
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|||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
49255441 |
attgtggctcaacttggggaagttactgagtttacttggccaagaccctttgatttcacaagaagctggaaaatttgctatgtgcatgattcctgctctt |
49255540 |
T |
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| Q |
345 |
tttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttat |
415 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||| |||||||||||| | ||||| ||||||| |
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| T |
49255541 |
tttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttcttcctcttgttat |
49255611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 257 - 415
Target Start/End: Original strand, 49268177 - 49268335
Alignment:
| Q |
257 |
cttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgca |
356 |
Q |
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|||||| | ||||| || ||||||||| ||||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||| |
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| T |
49268177 |
cttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaattttccatgtgcatgattcctgctctatttgcttatgca |
49268276 |
T |
|
| Q |
357 |
acacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttat |
415 |
Q |
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|| |||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
49268277 |
acgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttat |
49268335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 49273259 - 49273359
Alignment:
| Q |
315 |
aaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgtta |
414 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||| ||||| ||| | |||||| |
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| T |
49273259 |
aaatatgttatgggcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgtta |
49273358 |
T |
|
| Q |
415 |
t |
415 |
Q |
| |
|
| |
|
|
| T |
49273359 |
t |
49273359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 29356746 - 29356858
Alignment:
| Q |
303 |
caagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatat |
402 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | || | || |||| ||||||||||||||||||||||||| |
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| T |
29356746 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatag |
29356845 |
T |
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| Q |
403 |
ttcctgttgttat |
415 |
Q |
| |
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||| | ||||||| |
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| T |
29356846 |
ttcatcttgttat |
29356858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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