View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14894_low_5 (Length: 394)
Name: NF14894_low_5
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14894_low_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 176292 - 175921
Alignment:
| Q |
1 |
tagaaacccccaagctgaagttatgcagaggtagaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatgtgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176292 |
tagaaacccccaagctgaagttatgcagaggtagaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatgtgcca |
176193 |
T |
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| Q |
101 |
tgaccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176192 |
tgaccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaaca |
176093 |
T |
|
| Q |
201 |
ttcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
176092 |
ttcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacat |
175993 |
T |
|
| Q |
301 |
cattttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcat |
375 |
Q |
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| T |
175992 |
cattttga---attccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcat |
175921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 7564960 - 7565106
Alignment:
| Q |
147 |
ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc |
246 |
Q |
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| T |
7564960 |
ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatcc |
7565059 |
T |
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| Q |
247 |
ttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
293 |
Q |
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| T |
7565060 |
ttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
203 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
293 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 55419619 - 55419478
Alignment:
| Q |
152 |
ttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctc |
251 |
Q |
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||||||||| |||||||||| || | |||||||||||||||| || | | ||||||| | |||| ||| || |||||||||||||| |||||| || |
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| T |
55419619 |
ttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttc |
55419520 |
T |
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| Q |
252 |
caagagttggtgcctaaagtgtgagccttaacttgagttttg |
293 |
Q |
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| T |
55419519 |
caaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 288
Target Start/End: Complemental strand, 3926898 - 3926760
Alignment:
| Q |
150 |
ttttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttc |
249 |
Q |
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||||||| ||| |||||||||| || |||||||||||||||| ||||||| ||| | ||||| |||||||| | |||||||||| ||||||||| | |
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| T |
3926898 |
ttttgattttctatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcc |
3926799 |
T |
|
| Q |
250 |
tccaagagttggtgcctaaagtgtgagccttaacttgag |
288 |
Q |
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| T |
3926798 |
tccaaaaattggtacctagagtatgaaccctaacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
228 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
296 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 3926979 - 3926917
Alignment:
| Q |
33 |
agaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagagaaagaatg |
95 |
Q |
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|||||| |||||||| | |||||||| |||| ||||| |||||||||| ||||||||||||| |
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| T |
3926979 |
agaccaaaatcgggccgtgaaatctcttgataggactcgtttcctaaatcaagagaaagaatg |
3926917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
228 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
293 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
228 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
293 |
Q |
| |
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||||||||||| ||||||||||||||||| ||| ||||| || ||| | ||||||||||||||| |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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