View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14894_low_6 (Length: 371)

Name: NF14894_low_6
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14894_low_6
NF14894_low_6
[»] chr6 (17 HSPs)
chr6 (1-355)||(27589117-27589471)
chr6 (259-355)||(27673361-27673457)
chr6 (42-169)||(26806924-26807051)
chr6 (67-145)||(27419716-27419794)
chr6 (73-136)||(27507203-27507266)
chr6 (67-136)||(27714447-27714516)
chr6 (67-136)||(26627533-26627602)
chr6 (67-136)||(26733510-26733579)
chr6 (67-140)||(31288403-31288476)
chr6 (67-129)||(26852714-26852776)
chr6 (69-170)||(27368178-27368279)
chr6 (69-170)||(27458525-27458626)
chr6 (81-132)||(27423389-27423440)
chr6 (91-143)||(26889614-26889666)
chr6 (92-136)||(27424493-27424537)
chr6 (67-145)||(26060250-26060326)
chr6 (67-145)||(26080220-26080296)
[»] scaffold0003 (3 HSPs)
scaffold0003 (67-145)||(67569-67647)
scaffold0003 (81-132)||(63923-63974)
scaffold0003 (92-136)||(62826-62870)
[»] scaffold0349 (1 HSPs)
scaffold0349 (67-136)||(17428-17497)
[»] chr1 (2 HSPs)
chr1 (83-136)||(26140939-26140992)
chr1 (259-303)||(264469-264513)
[»] chr4 (7 HSPs)
chr4 (91-145)||(5082178-5082232)
chr4 (96-135)||(18675270-18675309)
chr4 (96-135)||(18719800-18719839)
chr4 (101-136)||(18077018-18077053)
chr4 (99-135)||(18651192-18651228)
chr4 (99-135)||(18693366-18693402)
chr4 (99-135)||(18727237-18727273)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 27589117 - 27589471
Alignment:
Q  1 accacagggattcaggtgaaggctgtgagagatggattccaagcatccttatgtgacagctacgtattctcctttctgcaggtcacaagcattcaaatag 100  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589117 accaaagggattcagctgaaggctgtgagagatggattccaagcatccttatgtgacagctacgtattctcctttctgcaggtcacaagcattcaaatag 27589216  T
Q  101 atgtgataagtaacacaatatacagttatgctgcaatagaaaagactcacgttgattacccgacaaaatgttttatattcaagcatttagctcaatgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589217 atgtgataagtaacacaatatacagttatgctgcaatagaaaagactcacgttgattacccgacaaaatgttttatattcaagcatttagctcaatgtaa 27589316  T
Q  201 acctcatgtgttattaagtaatgtttcaattgtaatcacgttatacttcacatcaaagttacaatatgacagtctattaattgaactacagcacttgcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589317 acctcatgtgttattaagtaatgtttcaattgtaatcacgttatacttcacatcaaagttacaatatgacagtctattaattgaactacagcacttgcaa 27589416  T
Q  301 actatgtttaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaa 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589417 actatgtttaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaa 27589471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 27673361 - 27673457
Alignment:
Q  259 ttacaatatgacagtctattaattgaactacagcacttgcaaactatgtttaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaa 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27673361 ttacaatatgacagtctattaattgaactacagcacttgcaaactatgattaaaaattcagtggtttcaaaattcgacattatgaaccatatgaaaa 27673457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 26807051 - 26806924
Alignment:
Q  42 agcatccttatgtgacagctacgtattctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaa 141  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||  |||||||    
T  26807051 agcatccttatgtgatagcaacggattctcctttctgcaggtcaaaagaattcaaatacatgtgataagtaacacaatatacatttatgcttgaatagaa 26806952  T
Q  142 aagactcacgttgattacccgacaaaat 169  Q
    |  || ||| ||||||||||||||||||    
T  26806951 acaacccacattgattacccgacaaaat 26806924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 27419716 - 27419794
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaaga 145  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  27419716 ttctccattctgcaagtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaacagagaaga 27419794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 27507203 - 27507266
Alignment:
Q  73 tttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27507203 tttctgcaggtcacatgcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 27507266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 27714447 - 27714516
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  27714447 ttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatatacagttatgctgcaa 27714516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 26627602 - 26627533
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  26627602 ttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatatacaattatgctgcaa 26627533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 26733579 - 26733510
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  26733579 ttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatatacaattatgctgcaa 26733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 31288476 - 31288403
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaataga 140  Q
    ||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  31288476 ttctcctgtctgcaagtcagaagcattcaaatagatatgataagtaacacaatatacagttatgctgctataga 31288403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 26852776 - 26852714
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttat 129  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  26852776 ttctcctttctgcaggacacaagcattcaaatagatgtggtaagtaacataatatacagttat 26852714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 27368178 - 27368279
Alignment:
Q  69 ctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaagactcacgttgattacccgacaaaa 168  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||| |||| |    |||||||| ||||||||    
T  27368178 ctcctttctgcaagacacaagcattcaaatagatatgataagtaacacaatatacagttacgctccaacagagaagattgctattgattactcgacaaaa 27368277  T
Q  169 tg 170  Q
    ||    
T  27368278 tg 27368279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 27458525 - 27458626
Alignment:
Q  69 ctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaagactcacgttgattacccgacaaaa 168  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||| |||| |    |||||||| ||||||||    
T  27458525 ctcctttctgcaagacacaagcattcaaatagatatgataagtaacacaatatacagttacgctccaacagagaagattgctattgattactcgacaaaa 27458624  T
Q  169 tg 170  Q
    ||    
T  27458625 tg 27458626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 27423389 - 27423440
Alignment:
Q  81 ggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgct 132  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  27423389 ggtcacatgcattcaaatagatttgataagtaacataatatacagttatgct 27423440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 26889666 - 26889614
Alignment:
Q  91 attcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaa 143  Q
    |||||||||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  26889666 attcaaatagatgtgataagtagcacaatatatagttacgttgcaatagaaaa 26889614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 27424493 - 27424537
Alignment:
Q  92 ttcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  27424493 ttcaaacagatgtgataagtaacacaatatagagttatgctgcaa 27424537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 26060326 - 26060250
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaaga 145  Q
    ||||||| |||| |||| |||||||||||||||||||||||  ||||||||  ||| ||||||||||||| ||| ||||    
T  26060326 ttctcctctctgaaggtaacaagcattcaaatagatgtgatgggtaacaca--atagagttatgctgcaacagataaga 26060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 26080296 - 26080220
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaaga 145  Q
    ||||||| |||| |||| |||||||||||||||||||||||  ||||||||  ||| ||||||||||||| ||| ||||    
T  26080296 ttctcctctctgaaggtaacaagcattcaaatagatgtgatgggtaacaca--atagagttatgctgcaacagataaga 26080220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 67647 - 67569
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaaga 145  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  67647 ttctccattctgcaagtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaacagagaaga 67569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 63974 - 63923
Alignment:
Q  81 ggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgct 132  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  63974 ggtcacatgcattcaaatagatttgataagtaacataatatacagttatgct 63923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 62870 - 62826
Alignment:
Q  92 ttcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  62870 ttcaaacagatgtgataagtaacacaatatagagttatgctgcaa 62826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 17497 - 17428
Alignment:
Q  67 ttctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  17497 ttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatatacagttatgctgcaa 17428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 26140992 - 26140939
Alignment:
Q  83 tcacaagcattcaaatagatgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26140992 tcacaagcattcaaatagatgtgataagtaacacaatatacagttacgctgcaa 26140939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 264469 - 264513
Alignment:
Q  259 ttacaatatgacagtctattaattgaactacagcacttgcaaact 303  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  264469 ttacaataagacagtctactaattgaactaaagcacttgcaaact 264513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 5082232 - 5082178
Alignment:
Q  91 attcaaatagatgtgataagtaacacaatatacagttatgctgcaatagaaaaga 145  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||    
T  5082232 attcaaattgatgtgataagtaacacagtatacagttatgctgcaacagagaaga 5082178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 18675270 - 18675309
Alignment:
Q  96 aatagatgtgataagtaacacaatatacagttatgctgca 135  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  18675270 aatagatgtgataagtaacacgatatacagttatgctgca 18675309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 18719800 - 18719839
Alignment:
Q  96 aatagatgtgataagtaacacaatatacagttatgctgca 135  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  18719800 aatagatgtgataagtaacacgatatacagttatgctgca 18719839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 136
Target Start/End: Complemental strand, 18077053 - 18077018
Alignment:
Q  101 atgtgataagtaacacaatatacagttatgctgcaa 136  Q
    |||||||||||||||||||||| |||||||||||||    
T  18077053 atgtgataagtaacacaatatagagttatgctgcaa 18077018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 18651192 - 18651228
Alignment:
Q  99 agatgtgataagtaacacaatatacagttatgctgca 135  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  18651192 agatgtgataactaacacaatatacatttatgctgca 18651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 18693366 - 18693402
Alignment:
Q  99 agatgtgataagtaacacaatatacagttatgctgca 135  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  18693366 agatgtgataactaacacaatatacatttatgctgca 18693402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 18727237 - 18727273
Alignment:
Q  99 agatgtgataagtaacacaatatacagttatgctgca 135  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  18727237 agatgtgataactaacacaatatacatttatgctgca 18727273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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