View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14894_low_7 (Length: 314)
Name: NF14894_low_7
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14894_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 3819885 - 3820051
Alignment:
| Q |
113 |
taggtggtagtgcattattttctttggtaactacactcatctatcaatattcaacggtgaacctttgtccaatatatagacagtcttttcagtatcaaac |
212 |
Q |
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| T |
3819885 |
taggtggtaatccattattttctttggcaactacactcatctatcaatactcaacggtgaacctttgtcgaatatata-------------------aac |
3819965 |
T |
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| Q |
213 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtg-tgaatgtttcatcattta |
297 |
Q |
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| T |
3819966 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtgttgaatgtttcatcattta |
3820051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 3819499 - 3819604
Alignment:
| Q |
10 |
ataccacacgttaagttttcttatctatttgacgtgagactcataacattgccacctctttaata-ccaacgtctacaacaacttccactctatcaatac |
108 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3819499 |
ataccacacattaagttttcttatctatttgacgtgagactcataacattaccacctctttaatagccaacgtctacaacaacttccactctatcaatac |
3819598 |
T |
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| Q |
109 |
taacta |
114 |
Q |
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|||||| |
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| T |
3819599 |
taacta |
3819604 |
T |
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