View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14894_low_9 (Length: 254)

Name: NF14894_low_9
Description: NF14894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14894_low_9
NF14894_low_9
[»] chr6 (3 HSPs)
chr6 (43-246)||(4867879-4868082)
chr6 (77-109)||(24157755-24157787)
chr6 (165-215)||(5320152-5320202)
[»] chr4 (3 HSPs)
chr4 (43-157)||(13460384-13460502)
chr4 (165-215)||(50313207-50313257)
chr4 (176-212)||(13763100-13763136)
[»] chr1 (2 HSPs)
chr1 (165-215)||(23893880-23893930)
chr1 (176-215)||(126003-126042)
[»] chr8 (1 HSPs)
chr8 (178-215)||(42774406-42774443)
[»] chr3 (1 HSPs)
chr3 (176-215)||(1292861-1292900)
[»] chr7 (1 HSPs)
chr7 (178-215)||(18712682-18712719)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 4867879 - 4868082
Alignment:
Q  43 agtaaagatgtactacagagttctttttccatagattattattattatatgtagtaaagttttgtagcacgtaggtatacgattatgttttgtagttatg 142  Q
    |||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  4867879 agtaaaaatgtactacacggttcttttcccatagattattattattatatgtagtaaagttttgtagcacgtaggtatacgattatgttttgtaggtata 4867978  T
Q  143 ctatatgttttacttnnnnnnngtatatataactaatttgtttcttaagtacattgtttaaggtattttagtannnnnnnagcattacggtatttaagta 242  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||| |||||    
T  4867979 ctatatgttttacttaaaaaaagtatatataactaatttgtttcttaagtacattgtttaaggtattttagtatttttttagcattatggtattgaagta 4868078  T
Q  243 tatt 246  Q
    ||||    
T  4868079 tatt 4868082  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 24157787 - 24157755
Alignment:
Q  77 attattattattatatgtagtaaagttttgtag 109  Q
    |||||||||||||||||||||||||||||||||    
T  24157787 attattattattatatgtagtaaagttttgtag 24157755  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 5320152 - 5320202
Alignment:
Q  165 gtatatataactaatttgtttcttaagtacattgtttaaggtattttagta 215  Q
    |||||||||  |||| |||||||||| ||||||||| ||||||||||||||    
T  5320152 gtatatatatttaatctgtttcttaaatacattgttcaaggtattttagta 5320202  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 13460384 - 13460502
Alignment:
Q  43 agtaaagatgtactacagagttctttttccatagattattattattatatgtagta----aagttttgtagcacgtaggtatacgattatgttttgtagt 138  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    ||||||||||||  |||||||||||||||||||||||||     
T  13460384 agtaaagatgtactacagagttcttttcccatatattattattattatatgtagtaaagtaagttttgtagcctgtaggtatacgattatgttttgtagg 13460483  T
Q  139 tatgctatatgttttactt 157  Q
    ||| |||||||||||||||    
T  13460484 tatactatatgttttactt 13460502  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 50313207 - 50313257
Alignment:
Q  165 gtatatataactaatttgtttcttaagtacattgtttaaggtattttagta 215  Q
    ||||||| || ||||||||||||||| || |||||||||||||||||||||    
T  50313207 gtatatacaattaatttgtttcttaactatattgtttaaggtattttagta 50313257  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 13763100 - 13763136
Alignment:
Q  176 taatttgtttcttaagtacattgtttaaggtatttta 212  Q
    |||| |||||||||| |||||||||||||||||||||    
T  13763100 taatctgtttcttaaatacattgtttaaggtatttta 13763136  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 23893930 - 23893880
Alignment:
Q  165 gtatatataactaatttgtttcttaagtacattgtttaaggtattttagta 215  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23893930 gtatatacaattaatttgtttcttaagtacattgtttaaggtattttagta 23893880  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 126003 - 126042
Alignment:
Q  176 taatttgtttcttaagtacattgtttaaggtattttagta 215  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  126003 taatctgtttcttaaatacattgtttaaggtattttagta 126042  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 42774443 - 42774406
Alignment:
Q  178 atttgtttcttaagtacattgtttaaggtattttagta 215  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42774443 atttgtttcttaagtacattgtttaaggcattttagta 42774406  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 1292900 - 1292861
Alignment:
Q  176 taatttgtttcttaagtacattgtttaaggtattttagta 215  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  1292900 taatttgtttcttaaatatattgtttaaggtattttagta 1292861  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 18712719 - 18712682
Alignment:
Q  178 atttgtttcttaagtacattgtttaaggtattttagta 215  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  18712719 atttgtttcttaagtacattgtttaaggctttttagta 18712682  T

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